Files

• INSTALL
• META.yml
• Makefile.PL
• README
• TODO
• bin/cx-apply-xslt
• bin/cx-chadoxml2chaos.pl
• bin/cx-chaos-report.pl
• bin/cx-chaos2chadoxml.pl
• bin/cx-chaos2gff.pl
• bin/cx-download-enscore.pl
• bin/cx-enscore2chaos.pl
• bin/cx-genbank2chaos.pl
• bin/cx-genbank2chaos.pl.orig
• bin/cx-gff2chaos.pl
• bin/cx-make-gene-islands.pl
• bin/cx-query-chado.pl
• lib/Bio/Chaos.pm
• lib/Bio/Chaos/ChaosGraph.pm
• lib/Bio/Chaos/DB/Chado.pm
• lib/Bio/Chaos/FeatureUtil.pm
• lib/Bio/Chaos/Handler/base_handler.pm
• lib/Bio/Chaos/Handler/gff3_to_chaos.pm
• lib/Bio/Chaos/Parser/base_parser.pm
• lib/Bio/Chaos/Parser/fasta.pm
• lib/Bio/Chaos/Parser/gff3.pm
• lib/Bio/Chaos/Root.pm
• lib/Bio/Chaos/XSLTHelper.pm
• lib/Bio/Chaos/xsl/chado-create-feature-nesting.xsl
• lib/Bio/Chaos/xsl/chado-expand-macros.xsl
• lib/Bio/Chaos/xsl/chado-feature-summary-html.xsl
• lib/Bio/Chaos/xsl/chado-insert-macros.xsl
• lib/Bio/Chaos/xsl/chado-remove-default-elements.xsl
• lib/Bio/Chaos/xsl/chado-remove-feature-nesting.xsl
• lib/Bio/Chaos/xsl/chado-to-gff3.xsl
• lib/Bio/Chaos/xsl/cx-chado-to-chaos.xsl
• lib/Bio/Chaos/xsl/cx-chaos-to-chado.xsl
• lib/Bio/Chaos/xsl/cx-chaos-to-chaos.xsl
• lib/Bio/Chaos/xsl/cx-chaos-to-dbxref-tbl.xsl
• lib/Bio/Chaos/xsl/cx-chaos-to-feature-summary-tbl.xsl
• lib/Bio/Chaos/xsl/cx-chaos-to-gff3.xsl
• model/chaos.dtd
• sample-data/Makefile
• sample-data/Rab1.chaos-xml
• t/00parse_gb_to_chaos.t
• t/02roundtrip.t
• t/data/AE003734_modmdg4.gb
• t/data/CG10833.wm.chado-xml
• t/data/CG16983.chado-xml
• xsl/Makefile-check
• xsl/README
• xsl/chado-create-feature-nesting.xsl
• xsl/chado-expand-macros.xsl
• xsl/chado-feature-summary-html.xsl
• xsl/chado-insert-macros.xsl
• xsl/chado-remove-default-elements.xsl
• xsl/chado-remove-feature-nesting.xsl
• xsl/chado-to-gff3.xsl
• xsl/cx-chado-to-chaos.xsl
• xsl/cx-chaos-to-chado.xsl
• xsl/cx-chaos-to-chaos.xsl
• xsl/cx-chaos-to-dbxref-tbl.xsl
• xsl/cx-chaos-to-feature-summary-tbl.xsl
• xsl/cx-chaos-to-gff3.xsl
• xsl/cx-chaos-to-prolog.xsl
• xsl/cx-fr.xsl
• xsl/cx-gff-to-chaos.xsl