Errors

no_pod_errors

Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm -- Around line 384: Unknown directive: =head Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/DBSQL/FastaSequenceAdaptor.pm -- Around line 144: Unknown directive: =head Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm -- Around line 35: Unknown directive: =head Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm -- Around line 333: =cut found outside a pod block. Skipping to next block. Around line 344: =cut found outside a pod block. Skipping to next block. Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/Registry.pm -- Around line 1456: Unknown directive: =head Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/Transcript.pm -- Around line 2855: Unknown directive: =head Bio-EnsEMBL-113.0.0/lib/Bio/EnsEMBL/Utils/Tree/Interval/Mutable/Node.pm -- Around line 134: Unknown directive: =head

use_warnings

Bio::EnsEMBL::Analysis, Bio::EnsEMBL::Analysis::PairAlign, Bio::EnsEMBL::Analysis::Programs, Bio::EnsEMBL::AssemblyExceptionFeature, Bio::EnsEMBL::BaseAlignFeature, Bio::EnsEMBL::CDS, Bio::EnsEMBL::CircularSlice, Bio::EnsEMBL::DBLoader, Bio::EnsEMBL::DBSQL::AnalysisAdaptor, Bio::EnsEMBL::DBSQL::AssemblyMapperAdaptor, Bio::EnsEMBL::DBSQL::BaseAdaptor, Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor, Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor, Bio::EnsEMBL::DBSQL::BaseMetaContainer, Bio::EnsEMBL::DBSQL::DBAdaptor, Bio::EnsEMBL::DBSQL::DBConnection, Bio::EnsEMBL::DBSQL::DBEntryAdaptor, Bio::EnsEMBL::DBSQL::DensityFeatureAdaptor, Bio::EnsEMBL::DBSQL::DensityTypeAdaptor, Bio::EnsEMBL::DBSQL::DnaAlignFeatureAdaptor, Bio::EnsEMBL::DBSQL::ExonAdaptor, Bio::EnsEMBL::DBSQL::GeneAdaptor, Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor, Bio::EnsEMBL::DBSQL::MiscFeatureAdaptor, Bio::EnsEMBL::DBSQL::OperonAdaptor, Bio::EnsEMBL::DBSQL::OperonTranscriptAdaptor, Bio::EnsEMBL::DBSQL::PredictionExonAdaptor, Bio::EnsEMBL::DBSQL::PredictionTranscriptAdaptor, Bio::EnsEMBL::DBSQL::ProteinAlignFeatureAdaptor, Bio::EnsEMBL::DBSQL::ProteinFeatureAdaptor, Bio::EnsEMBL::DBSQL::RepeatFeatureAdaptor, Bio::EnsEMBL::DBSQL::SeqRegionSynonymAdaptor, Bio::EnsEMBL::DBSQL::SimpleFeatureAdaptor, Bio::EnsEMBL::DBSQL::SliceAdaptor, Bio::EnsEMBL::DBSQL::StatementHandle, Bio::EnsEMBL::DBSQL::SupportingFeatureAdaptor, Bio::EnsEMBL::DBSQL::TranscriptAdaptor, Bio::EnsEMBL::DBSQL::TranscriptSupportingFeatureAdaptor, Bio::EnsEMBL::DBSQL::TranslationAdaptor, Bio::EnsEMBL::DBSQL::UnmappedObjectAdaptor, Bio::EnsEMBL::DensityPlot::BinValue, Bio::EnsEMBL::DensityPlot::BinValueSet, Bio::EnsEMBL::DnaDnaAlignFeature, Bio::EnsEMBL::DnaPepAlignFeature, Bio::EnsEMBL::Exon, Bio::EnsEMBL::ExonTranscript, Bio::EnsEMBL::External::ExternalFeatureAdaptor, Bio::EnsEMBL::FeaturePair, Bio::EnsEMBL::Gene, Bio::EnsEMBL::IdentityXref, Bio::EnsEMBL::KaryotypeBand, Bio::EnsEMBL::LRGSlice, Bio::EnsEMBL::MANE, Bio::EnsEMBL::Map::DBSQL::DitagAdaptor, Bio::EnsEMBL::Map::DBSQL::DitagFeatureAdaptor, Bio::EnsEMBL::Map::DBSQL::MarkerAdaptor, Bio::EnsEMBL::Map::DBSQL::MarkerFeatureAdaptor, Bio::EnsEMBL::Map::Ditag, Bio::EnsEMBL::Map::DitagFeature, Bio::EnsEMBL::Map::MapLocation, Bio::EnsEMBL::Map::Marker, Bio::EnsEMBL::Map::MarkerFeature, Bio::EnsEMBL::Map::MarkerSynonym, Bio::EnsEMBL::Mapper, Bio::EnsEMBL::Mapper::Coordinate, Bio::EnsEMBL::Mapper::Gap, Bio::EnsEMBL::Mapper::IndelCoordinate, Bio::EnsEMBL::Mapper::IndelPair, Bio::EnsEMBL::Mapper::Pair, Bio::EnsEMBL::Mapper::RangeRegistry, Bio::EnsEMBL::Mapper::Unit, Bio::EnsEMBL::MiscSet, Bio::EnsEMBL::PepDnaAlignFeature, Bio::EnsEMBL::PredictionExon, Bio::EnsEMBL::PredictionTranscript, Bio::EnsEMBL::ProteinFeature, Bio::EnsEMBL::RepeatConsensus, Bio::EnsEMBL::RepeatFeature, Bio::EnsEMBL::SeqFeature, Bio::EnsEMBL::SimpleFeature, Bio::EnsEMBL::Slice, Bio::EnsEMBL::Transcript, Bio::EnsEMBL::TranscriptFactory, Bio::EnsEMBL::Translation, Bio::EnsEMBL::UTR, Bio::EnsEMBL::Upstream, Bio::EnsEMBL::Utils::Cache, Bio::EnsEMBL::Utils::CigarString, Bio::EnsEMBL::Utils::Converter, Bio::EnsEMBL::Utils::Converter::bio_ens, Bio::EnsEMBL::Utils::Converter::bio_ens_analysis, Bio::EnsEMBL::Utils::Converter::bio_ens_exon, Bio::EnsEMBL::Utils::Converter::bio_ens_featurePair, Bio::EnsEMBL::Utils::Converter::bio_ens_gene, Bio::EnsEMBL::Utils::Converter::bio_ens_hit, Bio::EnsEMBL::Utils::Converter::bio_ens_hsp, Bio::EnsEMBL::Utils::Converter::bio_ens_predictionExon, Bio::EnsEMBL::Utils::Converter::bio_ens_predictionGene, Bio::EnsEMBL::Utils::Converter::bio_ens_seqFeature, Bio::EnsEMBL::Utils::Converter::bio_ens_transcript, Bio::EnsEMBL::Utils::Converter::ens_bio, Bio::EnsEMBL::Utils::Converter::ens_bio_featurePair, Bio::EnsEMBL::Utils::Converter::ens_bio_seqFeature, Bio::EnsEMBL::Utils::EasyArgv, Bio::EnsEMBL::Utils::Interval, Bio::EnsEMBL::Utils::PolyA, Bio::EnsEMBL::Utils::SeqDumper, Bio::EnsEMBL::Utils::SeqRegionCache, Bio::EnsEMBL::Utils::Tree::Interval::Immutable, Bio::EnsEMBL::Utils::Tree::Interval::Immutable::Node, Bio::EnsEMBL::Utils::Tree::Interval::Mutable, Bio::EnsEMBL::Utils::Tree::Interval::Mutable::Node, Bio::EnsEMBL::Utils::Tree::Interval::Mutable::PP