Files

• META.json
• META.yml
• Makefile.PL
• er_scripts/all_entities_AlignmentTree
• er_scripts/all_entities_AlleleFrequency
• er_scripts/all_entities_Annotation
• er_scripts/all_entities_Assay
• er_scripts/all_entities_AtomicRegulon
• er_scripts/all_entities_Attribute
• er_scripts/all_entities_Biomass
• er_scripts/all_entities_BiomassCompound
• er_scripts/all_entities_Compartment
• er_scripts/all_entities_Complex
• er_scripts/all_entities_Compound
• er_scripts/all_entities_Contig
• er_scripts/all_entities_ContigChunk
• er_scripts/all_entities_ContigSequence
• er_scripts/all_entities_CoregulatedSet
• er_scripts/all_entities_Diagram
• er_scripts/all_entities_EcNumber
• er_scripts/all_entities_Experiment
• er_scripts/all_entities_Family
• er_scripts/all_entities_Feature
• er_scripts/all_entities_Genome
• er_scripts/all_entities_Identifier
• er_scripts/all_entities_Locality
• er_scripts/all_entities_Media
• er_scripts/all_entities_Model
• er_scripts/all_entities_ModelCompartment
• er_scripts/all_entities_OTU
• er_scripts/all_entities_ObservationalUnit
• er_scripts/all_entities_PairSet
• er_scripts/all_entities_Pairing
• er_scripts/all_entities_ProbeSet
• er_scripts/all_entities_ProteinSequence
• er_scripts/all_entities_Publication
• er_scripts/all_entities_Reaction
• er_scripts/all_entities_ReactionRule
• er_scripts/all_entities_Reagent
• er_scripts/all_entities_Requirement
• er_scripts/all_entities_Role
• er_scripts/all_entities_SSCell
• er_scripts/all_entities_SSRow
• er_scripts/all_entities_Scenario
• er_scripts/all_entities_Source
• er_scripts/all_entities_StudyExperiment
• er_scripts/all_entities_Subsystem
• er_scripts/all_entities_SubsystemClass
• er_scripts/all_entities_TaxonomicGrouping
• er_scripts/all_entities_Trait
• er_scripts/all_entities_Variant
• er_scripts/all_entities_Variation
• er_scripts/get_entity_AlignmentTree
• er_scripts/get_entity_AlleleFrequency
• er_scripts/get_entity_Annotation
• er_scripts/get_entity_Assay
• er_scripts/get_entity_AtomicRegulon
• er_scripts/get_entity_Attribute
• er_scripts/get_entity_Biomass
• er_scripts/get_entity_BiomassCompound
• er_scripts/get_entity_Compartment
• er_scripts/get_entity_Complex
• er_scripts/get_entity_Compound
• er_scripts/get_entity_Contig
• er_scripts/get_entity_ContigChunk
• er_scripts/get_entity_ContigSequence
• er_scripts/get_entity_CoregulatedSet
• er_scripts/get_entity_Diagram
• er_scripts/get_entity_EcNumber
• er_scripts/get_entity_Experiment
• er_scripts/get_entity_Family
• er_scripts/get_entity_Feature
• er_scripts/get_entity_Genome
• er_scripts/get_entity_Identifier
• er_scripts/get_entity_Locality
• er_scripts/get_entity_Media
• er_scripts/get_entity_Model
• er_scripts/get_entity_ModelCompartment
• er_scripts/get_entity_OTU
• er_scripts/get_entity_ObservationalUnit
• er_scripts/get_entity_PairSet
• er_scripts/get_entity_Pairing
• er_scripts/get_entity_ProbeSet
• er_scripts/get_entity_ProteinSequence
• er_scripts/get_entity_Publication
• er_scripts/get_entity_Reaction
• er_scripts/get_entity_ReactionRule
• er_scripts/get_entity_Reagent
• er_scripts/get_entity_Requirement
• er_scripts/get_entity_Role
• er_scripts/get_entity_SSCell
• er_scripts/get_entity_SSRow
• er_scripts/get_entity_Scenario
• er_scripts/get_entity_Source
• er_scripts/get_entity_StudyExperiment
• er_scripts/get_entity_Subsystem
• er_scripts/get_entity_SubsystemClass
• er_scripts/get_entity_TaxonomicGrouping
• er_scripts/get_entity_Trait
• er_scripts/get_entity_Variant
• er_scripts/get_entity_Variation
• er_scripts/get_relationship_AffectsLevelOf
• er_scripts/get_relationship_Aligns
• er_scripts/get_relationship_Annotates
• er_scripts/get_relationship_Asserts
• er_scripts/get_relationship_AssertsFunctionFor
• er_scripts/get_relationship_Comprises
• er_scripts/get_relationship_Concerns
• er_scripts/get_relationship_Contains
• er_scripts/get_relationship_Controls
• er_scripts/get_relationship_DefinedBy
• er_scripts/get_relationship_Describes
• er_scripts/get_relationship_Determines
• er_scripts/get_relationship_DeterminesFunctionOf
• er_scripts/get_relationship_Displays
• er_scripts/get_relationship_Encompasses
• er_scripts/get_relationship_Formulated
• er_scripts/get_relationship_GeneratedLevelsFor
• er_scripts/get_relationship_HadResultsProducedBy
• er_scripts/get_relationship_HasAsExemplar
• er_scripts/get_relationship_HasAsSequence
• er_scripts/get_relationship_HasAsTerminus
• er_scripts/get_relationship_HasAssertedFunctionFrom
• er_scripts/get_relationship_HasAssertionFrom
• er_scripts/get_relationship_HasCompoundAliasFrom
• er_scripts/get_relationship_HasCoregulationWith
• er_scripts/get_relationship_HasDefaultLocation
• er_scripts/get_relationship_HasFunctional
• er_scripts/get_relationship_HasIndicatedSignalFrom
• er_scripts/get_relationship_HasLevelsFrom
• er_scripts/get_relationship_HasMember
• er_scripts/get_relationship_HasParticipant
• er_scripts/get_relationship_HasPresenceOf
• er_scripts/get_relationship_HasProposedLocationIn
• er_scripts/get_relationship_HasProteinMember
• er_scripts/get_relationship_HasReactionAliasFrom
• er_scripts/get_relationship_HasRealLocationIn
• er_scripts/get_relationship_HasRepresentativeOf
• er_scripts/get_relationship_HasResultsFor
• er_scripts/get_relationship_HasResultsIn
• er_scripts/get_relationship_HasRole
• er_scripts/get_relationship_HasSection
• er_scripts/get_relationship_HasStep
• er_scripts/get_relationship_HasTrait
• er_scripts/get_relationship_HasUnits
• er_scripts/get_relationship_HasUsage
• er_scripts/get_relationship_HasValueFor
• er_scripts/get_relationship_HasValueIn
• er_scripts/get_relationship_HasVariant
• er_scripts/get_relationship_HasVariation
• er_scripts/get_relationship_HasVariationIn
• er_scripts/get_relationship_Impacts
• er_scripts/get_relationship_Implements
• er_scripts/get_relationship_Imported
• er_scripts/get_relationship_Includes
• er_scripts/get_relationship_IncludesPart
• er_scripts/get_relationship_IncludesPartOf
• er_scripts/get_relationship_IndicatedLevelsFor
• er_scripts/get_relationship_IndicatesSignalFor
• er_scripts/get_relationship_Involves
• er_scripts/get_relationship_IsARequirementIn
• er_scripts/get_relationship_IsARequirementOf
• er_scripts/get_relationship_IsATopicOf
• er_scripts/get_relationship_IsAffectedIn
• er_scripts/get_relationship_IsAlignedBy
• er_scripts/get_relationship_IsAlignedIn
• er_scripts/get_relationship_IsAlignmentFor
• er_scripts/get_relationship_IsAnnotatedBy
• er_scripts/get_relationship_IsAssayOf
• er_scripts/get_relationship_IsAssayedBy
• er_scripts/get_relationship_IsBindingSiteFor
• er_scripts/get_relationship_IsBoundBy
• er_scripts/get_relationship_IsClassFor
• er_scripts/get_relationship_IsCollectedInto
• er_scripts/get_relationship_IsCollectionOf
• er_scripts/get_relationship_IsComponentOf
• er_scripts/get_relationship_IsComposedOf
• er_scripts/get_relationship_IsComprisedOf
• er_scripts/get_relationship_IsConfiguredBy
• er_scripts/get_relationship_IsConsistentTo
• er_scripts/get_relationship_IsConsistentWith
• er_scripts/get_relationship_IsContainedIn
• er_scripts/get_relationship_IsControlledUsing
• er_scripts/get_relationship_IsCoregulatedWith
• er_scripts/get_relationship_IsCoupledTo
• er_scripts/get_relationship_IsCoupledWith
• er_scripts/get_relationship_IsDefaultFor
• er_scripts/get_relationship_IsDefaultLocationOf
• er_scripts/get_relationship_IsDescribedBy
• er_scripts/get_relationship_IsDeterminedBy
• er_scripts/get_relationship_IsDisplayedOn
• er_scripts/get_relationship_IsDividedInto
• er_scripts/get_relationship_IsDivisionOf
• er_scripts/get_relationship_IsEncompassedIn
• er_scripts/get_relationship_IsExemplarOf
• er_scripts/get_relationship_IsFamilyFor
• er_scripts/get_relationship_IsFormedInto
• er_scripts/get_relationship_IsFormedOf
• er_scripts/get_relationship_IsFunctionalIn
• er_scripts/get_relationship_IsGroupFor
• er_scripts/get_relationship_IsImpactedBy
• er_scripts/get_relationship_IsImplementedBy
• er_scripts/get_relationship_IsInClass
• er_scripts/get_relationship_IsInGroup
• er_scripts/get_relationship_IsInPair
• er_scripts/get_relationship_IsInTaxa
• er_scripts/get_relationship_IsIncludedIn
• er_scripts/get_relationship_IsInstanceOf
• er_scripts/get_relationship_IsInstantiatedBy
• er_scripts/get_relationship_IsInvolvedIn
• er_scripts/get_relationship_IsLocated
• er_scripts/get_relationship_IsLocatedIn
• er_scripts/get_relationship_IsLocatedOn
• er_scripts/get_relationship_IsLocusFor
• er_scripts/get_relationship_IsManagedBy
• er_scripts/get_relationship_IsMemberOf
• er_scripts/get_relationship_IsModeledBy
• er_scripts/get_relationship_IsNamedBy
• er_scripts/get_relationship_IsOwnedBy
• er_scripts/get_relationship_IsOwnerOf
• er_scripts/get_relationship_IsPairOf
• er_scripts/get_relationship_IsPartOf
• er_scripts/get_relationship_IsParticipationOf
• er_scripts/get_relationship_IsPresentIn
• er_scripts/get_relationship_IsProjectedOnto
• er_scripts/get_relationship_IsProposedLocationOf
• er_scripts/get_relationship_IsProteinFor
• er_scripts/get_relationship_IsProteinMemberOf
• er_scripts/get_relationship_IsRealLocationOf
• er_scripts/get_relationship_IsReferencedBy
• er_scripts/get_relationship_IsRegulatedIn
• er_scripts/get_relationship_IsRegulatedSetOf
• er_scripts/get_relationship_IsRelevantFor
• er_scripts/get_relationship_IsRelevantTo
• er_scripts/get_relationship_IsRepresentedBy
• er_scripts/get_relationship_IsRepresentedIn
• er_scripts/get_relationship_IsRequiredBy
• er_scripts/get_relationship_IsRoleFor
• er_scripts/get_relationship_IsRoleOf
• er_scripts/get_relationship_IsRowOf
• er_scripts/get_relationship_IsSectionOf
• er_scripts/get_relationship_IsSequenceOf
• er_scripts/get_relationship_IsShownOn
• er_scripts/get_relationship_IsStepOf
• er_scripts/get_relationship_IsSubInstanceOf
• er_scripts/get_relationship_IsSubclassOf
• er_scripts/get_relationship_IsSummarizedBy
• er_scripts/get_relationship_IsSuperclassOf
• er_scripts/get_relationship_IsTargetOf
• er_scripts/get_relationship_IsTaxonomyOf
• er_scripts/get_relationship_IsTerminusFor
• er_scripts/get_relationship_IsTriggeredBy
• er_scripts/get_relationship_IsUsageOf
• er_scripts/get_relationship_IsUseOf
• er_scripts/get_relationship_IsUsedAs
• er_scripts/get_relationship_IsUsedBy
• er_scripts/get_relationship_IsUtilizedIn
• er_scripts/get_relationship_IsVariantOf
• er_scripts/get_relationship_IsVariedIn
• er_scripts/get_relationship_Manages
• er_scripts/get_relationship_Measures
• er_scripts/get_relationship_Models
• er_scripts/get_relationship_Names
• er_scripts/get_relationship_OperatesIn
• er_scripts/get_relationship_Overlaps
• er_scripts/get_relationship_ParticipatesAs
• er_scripts/get_relationship_ParticipatesIn
• er_scripts/get_relationship_ProducedResultsFor
• er_scripts/get_relationship_Produces
• er_scripts/get_relationship_ProjectsOnto
• er_scripts/get_relationship_Provided
• er_scripts/get_relationship_ReflectsStateOf
• er_scripts/get_relationship_Requires
• er_scripts/get_relationship_ResultsIn
• er_scripts/get_relationship_RunsByDefaultIn
• er_scripts/get_relationship_Shows
• er_scripts/get_relationship_Submitted
• er_scripts/get_relationship_SummarizedBy
• er_scripts/get_relationship_Summarizes
• er_scripts/get_relationship_Targets
• er_scripts/get_relationship_Triggers
• er_scripts/get_relationship_Uses
• er_scripts/get_relationship_UsesAliasForCompound
• er_scripts/get_relationship_UsesAliasForReaction
• er_scripts/get_relationship_UsesReference
• er_scripts/get_relationship_Validates
• er_scripts/get_relationship_WasDetermiedBy
• er_scripts/get_relationship_WasFormulatedBy
• er_scripts/get_relationship_WasGeneratedFrom
• er_scripts/get_relationship_WasImportedFrom
• er_scripts/get_relationship_WasProvidedBy
• er_scripts/get_relationship_WasSubmittedBy
• er_scripts/query_entity_AlignmentTree
• er_scripts/query_entity_AlleleFrequency
• er_scripts/query_entity_Annotation
• er_scripts/query_entity_Assay
• er_scripts/query_entity_AtomicRegulon
• er_scripts/query_entity_Attribute
• er_scripts/query_entity_Biomass
• er_scripts/query_entity_BiomassCompound
• er_scripts/query_entity_Compartment
• er_scripts/query_entity_Complex
• er_scripts/query_entity_Compound
• er_scripts/query_entity_Contig
• er_scripts/query_entity_ContigChunk
• er_scripts/query_entity_ContigSequence
• er_scripts/query_entity_CoregulatedSet
• er_scripts/query_entity_Diagram
• er_scripts/query_entity_EcNumber
• er_scripts/query_entity_Experiment
• er_scripts/query_entity_Family
• er_scripts/query_entity_Feature
• er_scripts/query_entity_Genome
• er_scripts/query_entity_Identifier
• er_scripts/query_entity_Locality
• er_scripts/query_entity_Media
• er_scripts/query_entity_Model
• er_scripts/query_entity_ModelCompartment
• er_scripts/query_entity_OTU
• er_scripts/query_entity_ObservationalUnit
• er_scripts/query_entity_PairSet
• er_scripts/query_entity_Pairing
• er_scripts/query_entity_ProbeSet
• er_scripts/query_entity_ProteinSequence
• er_scripts/query_entity_Publication
• er_scripts/query_entity_Reaction
• er_scripts/query_entity_ReactionRule
• er_scripts/query_entity_Reagent
• er_scripts/query_entity_Requirement
• er_scripts/query_entity_Role
• er_scripts/query_entity_SSCell
• er_scripts/query_entity_SSRow
• er_scripts/query_entity_Scenario
• er_scripts/query_entity_Source
• er_scripts/query_entity_StudyExperiment
• er_scripts/query_entity_Subsystem
• er_scripts/query_entity_SubsystemClass
• er_scripts/query_entity_TaxonomicGrouping
• er_scripts/query_entity_Trait
• er_scripts/query_entity_Variant
• er_scripts/query_entity_Variation
• lib/Bio/KBase.pm
• lib/Bio/KBase/CDMI/CDMI.pm
• lib/Bio/KBase/CDMI/CDMIClient.pm
• lib/Bio/KBase/CDMI/CDMILoader.pm
• lib/Bio/KBase/CDMI/CDMIUtils.pm
• lib/Bio/KBase/CDMI/CDMI_APIImpl.pm
• lib/Bio/KBase/CDMI/CDMI_EntityAPIImpl.pm
• lib/Bio/KBase/CDMI/Client.pm
• lib/Bio/KBase/CDMI/EntityImpl.pm
• lib/Bio/KBase/CDMI/FamilyType.pm
• lib/Bio/KBase/CDMI/Service.pm
• lib/Bio/KBase/CDMI/Sources.pm
• lib/Bio/KBase/Exceptions.pm
• lib/Bio/KBase/GenomeAnnotation/Client.pm
• lib/Bio/KBase/GenomeAnnotation/GenomeAnnotationImpl.pm
• lib/Bio/KBase/GenomeAnnotation/Service.pm
• lib/Bio/KBase/IDServer/Client.pm
• lib/Bio/KBase/IDServer/Impl.pm
• lib/Bio/KBase/IDServer/Service.pm
• lib/Bio/KBase/InvocationService/Client.pm
• lib/Bio/KBase/InvocationService/InvocationServiceImpl.pm
• lib/Bio/KBase/InvocationService/PipelineGrammar.pm
• lib/Bio/KBase/InvocationService/Service.pm
• lib/Bio/KBase/InvocationService/ValidCommands.pm
• lib/Bio/KBase/Utilities/ScriptThing.pm
• scripts/all_roles_used_in_models
• scripts/all_roles_used_in_models_and_subsystems
• scripts/alleles_to_bp_locs
• scripts/alleles_to_traits
• scripts/atomic_regulons_to_fids
• scripts/close_genomes
• scripts/co_occurrence_evidence
• scripts/complexes_to_complex_data
• scripts/complexes_to_roles
• scripts/contigs_to_lengths
• scripts/contigs_to_md5s
• scripts/contigs_to_sequences
• scripts/corresponds
• scripts/dump_relationship
• scripts/equiv_sequence_assertions
• scripts/ermodel_to_text
• scripts/external_ids_to_kbase_ids
• scripts/fids_to_annotations
• scripts/fids_to_atomic_regulons
• scripts/fids_to_co_occurring_fids
• scripts/fids_to_coexpressed_fids
• scripts/fids_to_dna_sequences
• scripts/fids_to_feature_data
• scripts/fids_to_functions
• scripts/fids_to_genomes
• scripts/fids_to_literature
• scripts/fids_to_locations
• scripts/fids_to_protein_families
• scripts/fids_to_protein_sequences
• scripts/fids_to_proteins
• scripts/fids_to_regulon_data
• scripts/fids_to_roles
• scripts/fids_to_subsystem_data
• scripts/fids_to_subsystems
• scripts/genomes_to_contigs
• scripts/genomes_to_fids
• scripts/genomes_to_genome_data
• scripts/genomes_to_md5s
• scripts/genomes_to_subsystems
• scripts/genomes_to_taxonomies
• scripts/get_abundance_profile
• scripts/kbase_ids_to_external_ids
• scripts/locations_to_dna_sequences
• scripts/locations_to_fids
• scripts/md5s_to_genomes
• scripts/otu_members
• scripts/ous_with_trait
• scripts/protein_families_to_co_occurring_families
• scripts/protein_families_to_fids
• scripts/protein_families_to_functions
• scripts/protein_families_to_proteins
• scripts/proteins_to_fids
• scripts/proteins_to_functions
• scripts/proteins_to_literature
• scripts/proteins_to_protein_families
• scripts/proteins_to_roles
• scripts/proteins_to_sequences
• scripts/reaction_strings
• scripts/reactions_to_complexes
• scripts/region_to_alleles
• scripts/region_to_fids
• scripts/regulons_to_fids
• scripts/representative
• scripts/representative_sequences
• scripts/roles_to_complexes
• scripts/roles_to_fids
• scripts/roles_to_protein_families
• scripts/roles_to_proteins
• scripts/roles_to_subsystems
• scripts/subsystems_to_fids
• scripts/subsystems_to_genomes
• scripts/subsystems_to_roles
• scripts/subsystems_to_spreadsheets
• scripts/text_search
• scripts/traits_to_alleles