Files

• LICENSE
• MANIFEST
• META.yml
• Makefile.PL
• PreReqs
• README
• bin/evaluate_pipeline
• bin/evolve_genome
• bin/vcf-compare
• dist.ini
• lib/Bio/Pipeline/Comparison.pm
• lib/Bio/Pipeline/Comparison/Exceptions.pm
• lib/Bio/Pipeline/Comparison/Generate/Evolve.pm
• lib/Bio/Pipeline/Comparison/Generate/EvolvedSet.pm
• lib/Bio/Pipeline/Comparison/Generate/VCFWriter.pm
• lib/Bio/Pipeline/Comparison/Report/InputParameters.pm
• lib/Bio/Pipeline/Comparison/Report/Overview.pm
• lib/Bio/Pipeline/Comparison/Report/ParseVCFCompare.pm
• lib/Bio/Pipeline/Comparison/Types.pm
• lib/Bio/Pipeline/Comparison/Validate/Executable.pm
• lib/FaSlice.pm
• lib/Vcf.pm
• t/Bio/Pipeline/Comparison/Generate/Evolve.t
• t/Bio/Pipeline/Comparison/Generate/EvolvedSet.t
• t/Bio/Pipeline/Comparison/Generate/VCFWriter.t
• t/Bio/Pipeline/Comparison/Report/InputParameters.t
• t/Bio/Pipeline/Comparison/Report/Overview.t
• t/Bio/Pipeline/Comparison/Report/ParseVCFCompare.t
• t/data/expected_reference_only_CA.fa
• t/data/expected_reference_only_CA.vcf.gz
• t/data/expected_reference_only_CA.vcf.gz.tbi
• t/data/false_negatives/known_false_negatives.vcf.gz
• t/data/false_negatives/known_false_negatives.vcf.gz.tbi
• t/data/false_negatives/observed_false_negatives.vcf.gz
• t/data/false_negatives/observed_false_negatives.vcf.gz.tbi
• t/data/false_positives/known_false_positives.vcf.gz
• t/data/false_positives/known_false_positives.vcf.gz.tbi
• t/data/false_positives/observed_false_positives.vcf.gz
• t/data/false_positives/observed_false_positives.vcf.gz.tbi
• t/data/false_positives_and_negatives/known_false_positives_and_negatives.vcf.gz
• t/data/false_positives_and_negatives/known_false_positives_and_negatives.vcf.gz.tbi
• t/data/false_positives_and_negatives/observed_false_positives_and_negatives.vcf.gz
• t/data/false_positives_and_negatives/observed_false_positives_and_negatives.vcf.gz.tbi
• t/data/no_overlap/known_no_overlap.vcf.gz
• t/data/no_overlap/known_no_overlap.vcf.gz.tbi
• t/data/no_overlap/observed_no_overlap.vcf.gz
• t/data/no_overlap/observed_no_overlap.vcf.gz.tbi
• t/data/perfect/known_perfect.vcf.gz
• t/data/perfect/known_perfect.vcf.gz.tbi
• t/data/perfect/observed_perfect.vcf.gz
• t/data/perfect/observed_perfect.vcf.gz.tbi
• t/data/reference.fa
• t/data/reference_only_CA.fa
• t/data/reference_uncompressed.vcf
• t/data/reference_without_tabix.vcf.gz
• t/requires_external.t
• weaver.ini