Files

• Build.PL
• META.yml
• Makefile.PL
• README
• cgi/CGIUtils.pm
• cgi/DefEnv.pm
• cgi/cgiComputePI.pl
• cgi/cgiComputeRT.pl
• cgi/cgiConvertSpectra.pl
• cgi/cgiInSilicoDef.pl
• cgi/digestor.pl
• cgi/digestorHome.pl
• cgi/fragmentator.pl
• cgi/fragmentatorHome.pl
• cgi/modifList.pl
• cgi/showEnv.pl
• lib/InSilicoSpectro.pm
• lib/InSilicoSpectro/InSilico.pod
• lib/InSilicoSpectro/InSilico/AASequence.pm
• lib/InSilicoSpectro/InSilico/CleavEnzyme.pm
• lib/InSilicoSpectro/InSilico/ExpCalibrator.pm
• lib/InSilicoSpectro/InSilico/InternIonSeries.pm
• lib/InSilicoSpectro/InSilico/IonSeries.pm
• lib/InSilicoSpectro/InSilico/IsoelPoint.pm
• lib/InSilicoSpectro/InSilico/MSMSOutput.pm
• lib/InSilicoSpectro/InSilico/MSMSTheoSpectrum.pm
• lib/InSilicoSpectro/InSilico/MassCalculator.pm
• lib/InSilicoSpectro/InSilico/ModRes.pm
• lib/InSilicoSpectro/InSilico/PMFMatch.pm
• lib/InSilicoSpectro/InSilico/Peptide.pm
• lib/InSilicoSpectro/InSilico/RetentionTimer.pm
• lib/InSilicoSpectro/InSilico/RetentionTimer/Hodges.pm
• lib/InSilicoSpectro/InSilico/RetentionTimer/Petritis.pm
• lib/InSilicoSpectro/InSilico/RetentionTimer/hodges_coef.xml
• lib/InSilicoSpectro/InSilico/Sequence.pm
• lib/InSilicoSpectro/InSilico/TermIonSeries.pm
• lib/InSilicoSpectro/Spectra.pod
• lib/InSilicoSpectro/Spectra/ExpSpectrum.pm
• lib/InSilicoSpectro/Spectra/Filter/MSFilter.pm
• lib/InSilicoSpectro/Spectra/Filter/MSFilterAlgorithm.pm
• lib/InSilicoSpectro/Spectra/Filter/MSFilterCollection.pm
• lib/InSilicoSpectro/Spectra/Filter/MSFilterDirectValue.pm
• lib/InSilicoSpectro/Spectra/MSMSCmpd.pm
• lib/InSilicoSpectro/Spectra/MSMSSpectra.pm
• lib/InSilicoSpectro/Spectra/MSRun.pm
• lib/InSilicoSpectro/Spectra/MSSpectra.pm
• lib/InSilicoSpectro/Spectra/PeakDescriptor.pm
• lib/InSilicoSpectro/Spectra/PhenyxPeakDescriptor.pm
• lib/InSilicoSpectro/Utils.pod
• lib/InSilicoSpectro/Utils/FileCached.pm
• lib/InSilicoSpectro/Utils/Files.pm
• lib/InSilicoSpectro/Utils/XML/SaxIndexMaker.pm
• lib/InSilicoSpectro/Utils/io.pm
• lib/InSilicoSpectro/config/RESID.insilicodef.xml
• lib/InSilicoSpectro/config/insilicodef.xml
• scripts/computePI.pl
• scripts/computeRT.pl
• scripts/convertSpectra.pl
• scripts/importResid.pl
• scripts/indexXml.pl
• scripts/peptSpectra/example.idr.xml
• scripts/peptSpectra/example.peptSpectra.xml
• scripts/peptSpectra/extractUniquePeptSpectra.pl
• scripts/peptSpectra/filterPeptSpectra.pl
• scripts/peptSpectra/fragErrorDistr.pl
• scripts/peptSpectra/getIonIntensities.pl
• scripts/peptSpectra/idr2pept.pl
• scripts/peptSpectra/ionStat.R
• scripts/peptSpectra/mascot2pept.pl
• scripts/peptSpectra/parentErrorDistr.pl
• scripts/peptSpectra/peptSpectra.dtd
• scripts/peptSpectra/splitPeptSpectraAtRandom.pl
• scripts/splice-idj.pl
• scripts/split-mgf.pl
• t/InSilico.t
• t/InSilico/data/406.dat
• t/InSilico/data/Hodges.xml
• t/InSilico/data/Petritis.xml
• t/InSilico/data/calHodges.xml
• t/InSilico/data/calPetritis.xml
• t/InSilico/data/coef.xml
• t/InSilico/data/expdata
• t/InSilico/data/fitguo.xml
• t/InSilico/data/fitip.xml
• t/InSilico/data/fitkrok.xml
• t/InSilico/data/fitpet.xml
• t/InSilico/data/krok.dat
• t/InSilico/data/nnet.xml
• t/InSilico/data/paramPI.xml
• t/InSilico/data/paramRT.xml
• t/InSilico/data/pidata.xml
• t/InSilico/data/piset.dtd
• t/InSilico/data/piset.xml
• t/InSilico/data/rtset.dtd
• t/InSilico/data/rtset.xml
• t/InSilico/data/test1
• t/InSilico/data/test2
• t/InSilico/examples_rt_pi
• t/InSilico/insilicodef-test.xml
• t/InSilico/listfiles
• t/InSilico/meuh.pkl
• t/InSilico/testAASequence.pl
• t/InSilico/testCalcDigest.pl
• t/InSilico/testCalcDigestOOP.pl
• t/InSilico/testCalcFrag.pl
• t/InSilico/testCalcFragOOP.pl
• t/InSilico/testCalcMatch.pl
• t/InSilico/testCalcMatchOOP.pl
• t/InSilico/testCalcPMFMatch.pl
• t/InSilico/testCalcPMFMatchOOP.pl
• t/InSilico/testCalcVarpept.pl
• t/InSilico/testCleavEnzyme.pl
• t/InSilico/testHodges.pl
• t/InSilico/testIsoelPoint.pl
• t/InSilico/testMSMSOutHtml.pl
• t/InSilico/testMSMSOutLatex.pl
• t/InSilico/testMSMSOutLegend.pl
• t/InSilico/testMSMSOutPlot.pl
• t/InSilico/testMSMSOutText.pl
• t/InSilico/testModRes.pl
• t/InSilico/testPeptide.pl
• t/InSilico/testPetritis.pl
• t/InSilico/testSequence.pl
• t/Spectra.t
• t/Spectra/166.dta
• t/Spectra/Filter/MSFilter.t
• t/Spectra/Filter/example.xml
• t/Spectra/Filter/testData/test_1-4.mgf
• t/Spectra/Filter/testData/test_1.xml
• t/Spectra/Filter/testData/test_10.xml
• t/Spectra/Filter/testData/test_10_result.mgf
• t/Spectra/Filter/testData/test_11.xml
• t/Spectra/Filter/testData/test_11_result.mgf
• t/Spectra/Filter/testData/test_12.xml
• t/Spectra/Filter/testData/test_12_result.mgf
• t/Spectra/Filter/testData/test_13.xml
• t/Spectra/Filter/testData/test_13_result.mgf
• t/Spectra/Filter/testData/test_14.xml
• t/Spectra/Filter/testData/test_14_result.mgf
• t/Spectra/Filter/testData/test_15.xml
• t/Spectra/Filter/testData/test_15_result.mgf
• t/Spectra/Filter/testData/test_16.idj.xml
• t/Spectra/Filter/testData/test_16.xml
• t/Spectra/Filter/testData/test_16_result.idj.xml
• t/Spectra/Filter/testData/test_1_result.mgf
• t/Spectra/Filter/testData/test_2.xml
• t/Spectra/Filter/testData/test_2_result.mgf
• t/Spectra/Filter/testData/test_3.xml
• t/Spectra/Filter/testData/test_3_result.mgf
• t/Spectra/Filter/testData/test_4.xml
• t/Spectra/Filter/testData/test_4_result.mgf
• t/Spectra/Filter/testData/test_5-15.mgf
• t/Spectra/Filter/testData/test_5.xml
• t/Spectra/Filter/testData/test_5_result.mgf
• t/Spectra/Filter/testData/test_6.xml
• t/Spectra/Filter/testData/test_6_result.mgf
• t/Spectra/Filter/testData/test_7.xml
• t/Spectra/Filter/testData/test_7_result.mgf
• t/Spectra/Filter/testData/test_8.xml
• t/Spectra/Filter/testData/test_8_result.mgf
• t/Spectra/Filter/testData/test_9.xml
• t/Spectra/Filter/testData/test_9_result.mgf
• t/Spectra/Filter/testData/test_algorithm.mgf
• t/Spectra/Filter/testData/test_algorithm.xml
• t/Spectra/Filter/testData/test_algorithm_2.xml
• t/Spectra/Filter/testData/test_collection.mgf
• t/Spectra/Filter/testData/test_collection.xml
• t/Spectra/Filter/testMSFilterAlgorithm.pl
• t/Spectra/Filter/testMSFilterCollection.pl
• t/Spectra/Filter/testMSFilterDirectValue.pl
• t/Spectra/MSRun.t
• t/Spectra/a.xml
• t/Spectra/idj_pmf+msms_unmapped.xml
• t/Spectra/mapping_test.txt
• t/Spectra/myo_ms2_1.04.xml
• t/Spectra/testExpSpectrum.pl
• t/Spectra/testPeakDescriptor.pl
• t/Spectra/testSpectra.pl
• t/Utils.t
• t/Utils/FileCached.t
• t/Utils/XML/144.pidres.xml
• t/Utils/XML/SaxIndexMaker.t
• t/Utils/XML/a.indexMaker.xml
• t/Utils/XML/testSaxIndexMaker.pl
• t/Utils/a.fasta.gz
• t/Utils/a.indexMaker.xml
• t/Utils/a.txt
• t/Utils/a.zip
• t/Utils/b.txt
• t/Utils/c.txt
• t/Utils/testFiles.pl
• t/Utils/testIO.pl