- Released by
- BIRNEY
- Version
- Release Date
- 2003-12-23
- Kwalitee
- 115.62
- Core Kwalitee
- 78.12
- LINKS
bioperl 1.4 Deleted
Files
- AUTHORS
- BUGS
- Bio/Align/AlignI.pm
- Bio/Align/DNAStatistics.pm
- Bio/Align/PairwiseStatistics.pm
- Bio/Align/StatisticsI.pm
- Bio/Align/Utilities.pm
- Bio/AlignIO.pm
- Bio/AlignIO/bl2seq.pm
- Bio/AlignIO/clustalw.pm
- Bio/AlignIO/emboss.pm
- Bio/AlignIO/fasta.pm
- Bio/AlignIO/maf.pm
- Bio/AlignIO/mase.pm
- Bio/AlignIO/mega.pm
- Bio/AlignIO/meme.pm
- Bio/AlignIO/metafasta.pm
- Bio/AlignIO/msf.pm
- Bio/AlignIO/nexus.pm
- Bio/AlignIO/pfam.pm
- Bio/AlignIO/phylip.pm
- Bio/AlignIO/prodom.pm
- Bio/AlignIO/psi.pm
- Bio/AlignIO/selex.pm
- Bio/AlignIO/stockholm.pm
- Bio/AnalysisI.pm
- Bio/AnalysisParserI.pm
- Bio/AnalysisResultI.pm
- Bio/AnnotatableI.pm
- Bio/Annotation/AnnotationFactory.pm
- Bio/Annotation/Collection.pm
- Bio/Annotation/Comment.pm
- Bio/Annotation/DBLink.pm
- Bio/Annotation/OntologyTerm.pm
- Bio/Annotation/Reference.pm
- Bio/Annotation/SimpleValue.pm
- Bio/Annotation/StructuredValue.pm
- Bio/Annotation/TypeManager.pm
- Bio/AnnotationCollectionI.pm
- Bio/AnnotationI.pm
- Bio/Assembly/Contig.pm
- Bio/Assembly/ContigAnalysis.pm
- Bio/Assembly/IO.pm
- Bio/Assembly/IO/ace.pm
- Bio/Assembly/IO/phrap.pm
- Bio/Assembly/Scaffold.pm
- Bio/Assembly/ScaffoldI.pm
- Bio/Biblio.pm
- Bio/Biblio/Article.pm
- Bio/Biblio/BiblioBase.pm
- Bio/Biblio/Book.pm
- Bio/Biblio/BookArticle.pm
- Bio/Biblio/IO.pm
- Bio/Biblio/IO/medline2ref.pm
- Bio/Biblio/IO/medlinexml.pm
- Bio/Biblio/IO/pubmed2ref.pm
- Bio/Biblio/IO/pubmedxml.pm
- Bio/Biblio/Journal.pm
- Bio/Biblio/JournalArticle.pm
- Bio/Biblio/MedlineArticle.pm
- Bio/Biblio/MedlineBook.pm
- Bio/Biblio/MedlineBookArticle.pm
- Bio/Biblio/MedlineJournal.pm
- Bio/Biblio/MedlineJournalArticle.pm
- Bio/Biblio/Organisation.pm
- Bio/Biblio/Patent.pm
- Bio/Biblio/Person.pm
- Bio/Biblio/Proceeding.pm
- Bio/Biblio/Provider.pm
- Bio/Biblio/PubmedArticle.pm
- Bio/Biblio/PubmedBookArticle.pm
- Bio/Biblio/PubmedJournalArticle.pm
- Bio/Biblio/Ref.pm
- Bio/Biblio/Service.pm
- Bio/Biblio/TechReport.pm
- Bio/Biblio/Thesis.pm
- Bio/Biblio/WebResource.pm
- Bio/Cluster/ClusterFactory.pm
- Bio/Cluster/FamilyI.pm
- Bio/Cluster/SequenceFamily.pm
- Bio/Cluster/UniGene.pm
- Bio/Cluster/UniGeneI.pm
- Bio/ClusterI.pm
- Bio/ClusterIO.pm
- Bio/ClusterIO/dbsnp.pm
- Bio/ClusterIO/unigene.pm
- Bio/CodonUsage/IO.pm
- Bio/CodonUsage/Table.pm
- Bio/Coordinate/Chain.pm
- Bio/Coordinate/Collection.pm
- Bio/Coordinate/ExtrapolatingPair.pm
- Bio/Coordinate/GeneMapper.pm
- Bio/Coordinate/Graph.pm
- Bio/Coordinate/MapperI.pm
- Bio/Coordinate/Pair.pm
- Bio/Coordinate/Result.pm
- Bio/Coordinate/Result/Gap.pm
- Bio/Coordinate/Result/Match.pm
- Bio/Coordinate/ResultI.pm
- Bio/Coordinate/Utils.pm
- Bio/DB/Ace.pm
- Bio/DB/Biblio/biofetch.pm
- Bio/DB/Biblio/soap.pm
- Bio/DB/BiblioI.pm
- Bio/DB/BioFetch.pm
- Bio/DB/CUTG.pm
- Bio/DB/DBFetch.pm
- Bio/DB/EMBL.pm
- Bio/DB/Failover.pm
- Bio/DB/Fasta.pm
- Bio/DB/FileCache.pm
- Bio/DB/Flat.pm
- Bio/DB/Flat/BDB.pm
- Bio/DB/Flat/BDB/embl.pm
- Bio/DB/Flat/BDB/fasta.pm
- Bio/DB/Flat/BDB/genbank.pm
- Bio/DB/Flat/BDB/swiss.pm
- Bio/DB/Flat/BDB/swissprot.pm
- Bio/DB/Flat/BinarySearch.pm
- Bio/DB/GDB.pm
- Bio/DB/GFF.pm
- Bio/DB/GFF/Adaptor/ace.pm
- Bio/DB/GFF/Adaptor/biofetch.pm
- Bio/DB/GFF/Adaptor/biofetch_oracle.pm
- Bio/DB/GFF/Adaptor/dbi.pm
- Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
- Bio/DB/GFF/Adaptor/dbi/iterator.pm
- Bio/DB/GFF/Adaptor/dbi/mysql.pm
- Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
- Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
- Bio/DB/GFF/Adaptor/dbi/oracle.pm
- Bio/DB/GFF/Adaptor/dbi/oracleace.pm
- Bio/DB/GFF/Adaptor/dbi/pg.pm
- Bio/DB/GFF/Adaptor/memory.pm
- Bio/DB/GFF/Adaptor/memory_iterator.pm
- Bio/DB/GFF/Aggregator.pm
- Bio/DB/GFF/Aggregator/alignment.pm
- Bio/DB/GFF/Aggregator/clone.pm
- Bio/DB/GFF/Aggregator/coding.pm
- Bio/DB/GFF/Aggregator/match.pm
- Bio/DB/GFF/Aggregator/none.pm
- Bio/DB/GFF/Aggregator/processed_transcript.pm
- Bio/DB/GFF/Aggregator/transcript.pm
- Bio/DB/GFF/Aggregator/ucsc_acembly.pm
- Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
- Bio/DB/GFF/Aggregator/ucsc_genscan.pm
- Bio/DB/GFF/Aggregator/ucsc_refgene.pm
- Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
- Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
- Bio/DB/GFF/Aggregator/ucsc_softberry.pm
- Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
- Bio/DB/GFF/Aggregator/ucsc_unigene.pm
- Bio/DB/GFF/Featname.pm
- Bio/DB/GFF/Feature.pm
- Bio/DB/GFF/Homol.pm
- Bio/DB/GFF/RelSegment.pm
- Bio/DB/GFF/Segment.pm
- Bio/DB/GFF/Typename.pm
- Bio/DB/GFF/Util/Binning.pm
- Bio/DB/GFF/Util/Rearrange.pm
- Bio/DB/GenBank.pm
- Bio/DB/GenPept.pm
- Bio/DB/InMemoryCache.pm
- Bio/DB/MANIFEST
- Bio/DB/Makefile.PL (manifest skip)
- Bio/DB/MeSH.pm
- Bio/DB/NCBIHelper.pm
- Bio/DB/Query/GenBank.pm
- Bio/DB/Query/WebQuery.pm
- Bio/DB/QueryI.pm
- Bio/DB/RandomAccessI.pm
- Bio/DB/RefSeq.pm
- Bio/DB/Registry.pm
- Bio/DB/SeqI.pm
- Bio/DB/SwissProt.pm
- Bio/DB/Taxonomy.pm
- Bio/DB/Taxonomy/entrez.pm
- Bio/DB/Taxonomy/flatfile.pm
- Bio/DB/Universal.pm
- Bio/DB/UpdateableSeqI.pm
- Bio/DB/WebDBSeqI.pm
- Bio/DB/XEMBL.pm
- Bio/DB/XEMBLService.pm
- Bio/DBLinkContainerI.pm
- Bio/Das/FeatureTypeI.pm
- Bio/Das/SegmentI.pm
- Bio/DasI.pm
- Bio/DescribableI.pm
- Bio/Event/EventGeneratorI.pm
- Bio/Event/EventHandlerI.pm
- Bio/Expression/FeatureGroup.pm
- Bio/Expression/FeatureGroup/FeatureGroupMas50.pm
- Bio/Expression/FeatureI.pm
- Bio/Expression/FeatureSet/FeatureSetMas50.pm
- Bio/Factory/AnalysisI.pm
- Bio/Factory/ApplicationFactoryI.pm
- Bio/Factory/DriverFactory.pm
- Bio/Factory/FTLocationFactory.pm
- Bio/Factory/HitFactoryI.pm
- Bio/Factory/LocationFactoryI.pm
- Bio/Factory/MapFactoryI.pm
- Bio/Factory/ObjectBuilderI.pm
- Bio/Factory/ObjectFactory.pm
- Bio/Factory/ObjectFactoryI.pm
- Bio/Factory/ResultFactoryI.pm
- Bio/Factory/SeqAnalysisParserFactory.pm
- Bio/Factory/SeqAnalysisParserFactoryI.pm
- Bio/Factory/SequenceFactoryI.pm
- Bio/Factory/SequenceProcessorI.pm
- Bio/Factory/SequenceStreamI.pm
- Bio/Factory/TreeFactoryI.pm
- Bio/FeatureHolderI.pm
- Bio/Graphics.pm
- Bio/Graphics/ConfiguratorI.pm
- Bio/Graphics/Feature.pm
- Bio/Graphics/FeatureFile.pm
- Bio/Graphics/FeatureFile/Iterator.pm
- Bio/Graphics/Glyph.pm
- Bio/Graphics/Glyph/Factory.pm
- Bio/Graphics/Glyph/alignment.pm
- Bio/Graphics/Glyph/anchored_arrow.pm
- Bio/Graphics/Glyph/arrow.pm
- Bio/Graphics/Glyph/box.pm
- Bio/Graphics/Glyph/cds.pm
- Bio/Graphics/Glyph/crossbox.pm
- Bio/Graphics/Glyph/diamond.pm
- Bio/Graphics/Glyph/dna.pm
- Bio/Graphics/Glyph/dot.pm
- Bio/Graphics/Glyph/ellipse.pm
- Bio/Graphics/Glyph/ex.pm
- Bio/Graphics/Glyph/extending_arrow.pm
- Bio/Graphics/Glyph/generic.pm
- Bio/Graphics/Glyph/graded_segments.pm
- Bio/Graphics/Glyph/group.pm
- Bio/Graphics/Glyph/heterogeneous_segments.pm
- Bio/Graphics/Glyph/line.pm
- Bio/Graphics/Glyph/minmax.pm
- Bio/Graphics/Glyph/oval.pm
- Bio/Graphics/Glyph/pinsertion.pm
- Bio/Graphics/Glyph/primers.pm
- Bio/Graphics/Glyph/processed_transcript.pm
- Bio/Graphics/Glyph/redgreen_box.pm
- Bio/Graphics/Glyph/redgreen_segment.pm
- Bio/Graphics/Glyph/rndrect.pm
- Bio/Graphics/Glyph/ruler_arrow.pm
- Bio/Graphics/Glyph/segmented_keyglyph.pm
- Bio/Graphics/Glyph/segments.pm
- Bio/Graphics/Glyph/span.pm
- Bio/Graphics/Glyph/splice_site.pm
- Bio/Graphics/Glyph/toomany.pm
- Bio/Graphics/Glyph/track.pm
- Bio/Graphics/Glyph/transcript.pm
- Bio/Graphics/Glyph/transcript2.pm
- Bio/Graphics/Glyph/translation.pm
- Bio/Graphics/Glyph/triangle.pm
- Bio/Graphics/Glyph/xyplot.pm
- Bio/Graphics/Panel.pm
- Bio/Graphics/Pictogram.pm
- Bio/Graphics/RendererI.pm
- Bio/Graphics/Util.pm
- Bio/IdCollectionI.pm
- Bio/IdentifiableI.pm
- Bio/Index/Abstract.pm
- Bio/Index/AbstractSeq.pm
- Bio/Index/Blast.pm
- Bio/Index/EMBL.pm
- Bio/Index/Fasta.pm
- Bio/Index/Fastq.pm
- Bio/Index/GenBank.pm
- Bio/Index/SwissPfam.pm
- Bio/Index/Swissprot.pm
- Bio/LiveSeq/AARange.pm
- Bio/LiveSeq/Chain.pm
- Bio/LiveSeq/ChainI.pm
- Bio/LiveSeq/DNA.pm
- Bio/LiveSeq/Exon.pm
- Bio/LiveSeq/Gene.pm
- Bio/LiveSeq/IO/BioPerl.pm
- Bio/LiveSeq/IO/Loader.pm
- Bio/LiveSeq/IO/README
- Bio/LiveSeq/IO/SRS.pm
- Bio/LiveSeq/Intron.pm
- Bio/LiveSeq/Mutation.pm
- Bio/LiveSeq/Mutator.pm
- Bio/LiveSeq/Prim_Transcript.pm
- Bio/LiveSeq/Range.pm
- Bio/LiveSeq/Repeat_Region.pm
- Bio/LiveSeq/Repeat_Unit.pm
- Bio/LiveSeq/SeqI.pm
- Bio/LiveSeq/Transcript.pm
- Bio/LiveSeq/Translation.pm
- Bio/LocatableSeq.pm
- Bio/Location/Atomic.pm
- Bio/Location/AvWithinCoordPolicy.pm
- Bio/Location/CoordinatePolicyI.pm
- Bio/Location/Fuzzy.pm
- Bio/Location/FuzzyLocationI.pm
- Bio/Location/NarrowestCoordPolicy.pm
- Bio/Location/Simple.pm
- Bio/Location/Split.pm
- Bio/Location/SplitLocationI.pm
- Bio/Location/WidestCoordPolicy.pm
- Bio/LocationI.pm
- Bio/Map/CytoMap.pm
- Bio/Map/CytoMarker.pm
- Bio/Map/CytoPosition.pm
- Bio/Map/LinkageMap.pm
- Bio/Map/LinkagePosition.pm
- Bio/Map/MapI.pm
- Bio/Map/MappableI.pm
- Bio/Map/Marker.pm
- Bio/Map/MarkerI.pm
- Bio/Map/Microsatellite.pm
- Bio/Map/OrderedPosition.pm
- Bio/Map/OrderedPositionWithDistance.pm
- Bio/Map/Position.pm
- Bio/Map/PositionI.pm
- Bio/Map/SimpleMap.pm
- Bio/MapIO.pm
- Bio/MapIO/mapmaker.pm
- Bio/Matrix/Generic.pm
- Bio/Matrix/IO.pm
- Bio/Matrix/IO/phylip.pm
- Bio/Matrix/IO/scoring.pm
- Bio/Matrix/MatrixI.pm
- Bio/Matrix/PSM/IO.pm
- Bio/Matrix/PSM/IO/mast.pm
- Bio/Matrix/PSM/IO/meme.pm
- Bio/Matrix/PSM/IO/transfac.pm
- Bio/Matrix/PSM/InstanceSite.pm
- Bio/Matrix/PSM/InstanceSiteI.pm
- Bio/Matrix/PSM/Psm.pm
- Bio/Matrix/PSM/PsmHeader.pm
- Bio/Matrix/PSM/PsmHeaderI.pm
- Bio/Matrix/PSM/PsmI.pm
- Bio/Matrix/PSM/SiteMatrix.pm
- Bio/Matrix/PSM/SiteMatrixI.pm
- Bio/Matrix/PhylipDist.pm
- Bio/Matrix/Scoring.pm
- Bio/Ontology/GOterm.pm
- Bio/Ontology/InterProTerm.pm
- Bio/Ontology/Ontology.pm
- Bio/Ontology/OntologyEngineI.pm
- Bio/Ontology/OntologyI.pm
- Bio/Ontology/OntologyStore.pm
- Bio/Ontology/Path.pm
- Bio/Ontology/PathI.pm
- Bio/Ontology/Relationship.pm
- Bio/Ontology/RelationshipFactory.pm
- Bio/Ontology/RelationshipI.pm
- Bio/Ontology/RelationshipType.pm
- Bio/Ontology/SimpleGOEngine.pm
- Bio/Ontology/SimpleOntologyEngine.pm
- Bio/Ontology/Term.pm
- Bio/Ontology/TermFactory.pm
- Bio/Ontology/TermI.pm
- Bio/OntologyIO.pm
- Bio/OntologyIO/Handlers/BaseSAXHandler.pm
- Bio/OntologyIO/Handlers/InterProHandler.pm
- Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
- Bio/OntologyIO/InterProParser.pm
- Bio/OntologyIO/dagflat.pm
- Bio/OntologyIO/goflat.pm
- Bio/OntologyIO/simplehierarchy.pm
- Bio/OntologyIO/soflat.pm
- Bio/Perl.pm
- Bio/Phenotype/Correlate.pm
- Bio/Phenotype/MeSH/Term.pm
- Bio/Phenotype/MeSH/Twig.pm
- Bio/Phenotype/Measure.pm
- Bio/Phenotype/OMIM/MiniMIMentry.pm
- Bio/Phenotype/OMIM/OMIMentry.pm
- Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm
- Bio/Phenotype/OMIM/OMIMparser.pm
- Bio/Phenotype/Phenotype.pm
- Bio/Phenotype/PhenotypeI.pm
- Bio/PopGen/Genotype.pm
- Bio/PopGen/GenotypeI.pm
- Bio/PopGen/IO.pm
- Bio/PopGen/IO/csv.pm
- Bio/PopGen/IO/prettybase.pm
- Bio/PopGen/Individual.pm
- Bio/PopGen/IndividualI.pm
- Bio/PopGen/Marker.pm
- Bio/PopGen/MarkerI.pm
- Bio/PopGen/PopStats.pm
- Bio/PopGen/Population.pm
- Bio/PopGen/PopulationI.pm
- Bio/PopGen/Simulation/Coalescent.pm
- Bio/PopGen/Simulation/GeneticDrift.pm
- Bio/PopGen/Statistics.pm
- Bio/PrimarySeq.pm
- Bio/PrimarySeqI.pm
- Bio/Range.pm
- Bio/RangeI.pm
- Bio/Restriction/Analysis.pm
- Bio/Restriction/Enzyme.pm
- Bio/Restriction/Enzyme/MultiCut.pm
- Bio/Restriction/Enzyme/MultiSite.pm
- Bio/Restriction/EnzymeCollection.pm
- Bio/Restriction/EnzymeI.pm
- Bio/Restriction/IO.pm
- Bio/Restriction/IO/bairoch.pm
- Bio/Restriction/IO/base.pm
- Bio/Restriction/IO/itype2.pm
- Bio/Restriction/IO/withrefm.pm
- Bio/Root/Err.pm
- Bio/Root/Exception.pm
- Bio/Root/Global.pm
- Bio/Root/HTTPget.pm
- Bio/Root/IO.pm
- Bio/Root/IOManager.pm
- Bio/Root/Object.pm
- Bio/Root/Root.pm
- Bio/Root/RootI.pm
- Bio/Root/Storable.pm
- Bio/Root/Utilities.pm
- Bio/Root/Vector.pm
- Bio/Root/Version.pm
- Bio/Root/Xref.pm
- Bio/Search/BlastUtils.pm
- Bio/Search/DatabaseI.pm
- Bio/Search/GenericDatabase.pm
- Bio/Search/HSP/BlastHSP.pm
- Bio/Search/HSP/FastaHSP.pm
- Bio/Search/HSP/GenericHSP.pm
- Bio/Search/HSP/HMMERHSP.pm
- Bio/Search/HSP/HSPFactory.pm
- Bio/Search/HSP/HSPI.pm
- Bio/Search/HSP/PSLHSP.pm
- Bio/Search/HSP/PsiBlastHSP.pm
- Bio/Search/HSP/WABAHSP.pm
- Bio/Search/Hit/BlastHit.pm
- Bio/Search/Hit/Fasta.pm
- Bio/Search/Hit/GenericHit.pm
- Bio/Search/Hit/HMMERHit.pm
- Bio/Search/Hit/HitFactory.pm
- Bio/Search/Hit/HitI.pm
- Bio/Search/Hit/PsiBlastHit.pm
- Bio/Search/Iteration/GenericIteration.pm
- Bio/Search/Iteration/IterationI.pm
- Bio/Search/Processor.pm
- Bio/Search/Result/BlastResult.pm
- Bio/Search/Result/GenericResult.pm
- Bio/Search/Result/HMMERResult.pm
- Bio/Search/Result/ResultFactory.pm
- Bio/Search/Result/ResultI.pm
- Bio/Search/Result/WABAResult.pm
- Bio/Search/SearchUtils.pm
- Bio/SearchDist.pm
- Bio/SearchIO.pm
- Bio/SearchIO/EventHandlerI.pm
- Bio/SearchIO/FastHitEventBuilder.pm
- Bio/SearchIO/IteratedSearchResultEventBuilder.pm
- Bio/SearchIO/SearchResultEventBuilder.pm
- Bio/SearchIO/SearchWriterI.pm
- Bio/SearchIO/Writer/BSMLResultWriter.pm
- Bio/SearchIO/Writer/GbrowseGFF.pm
- Bio/SearchIO/Writer/HSPTableWriter.pm
- Bio/SearchIO/Writer/HTMLResultWriter.pm
- Bio/SearchIO/Writer/HitTableWriter.pm
- Bio/SearchIO/Writer/ResultTableWriter.pm
- Bio/SearchIO/Writer/TextResultWriter.pm
- Bio/SearchIO/axt.pm
- Bio/SearchIO/blast.pm
- Bio/SearchIO/blasttable.pm
- Bio/SearchIO/blastxml.pm
- Bio/SearchIO/exonerate.pm
- Bio/SearchIO/fasta.pm
- Bio/SearchIO/hmmer.pm
- Bio/SearchIO/megablast.pm
- Bio/SearchIO/psl.pm
- Bio/SearchIO/sim4.pm
- Bio/SearchIO/waba.pm
- Bio/SearchIO/wise.pm
- Bio/Seq.pm
- Bio/Seq/BaseSeqProcessor.pm
- Bio/Seq/EncodedSeq.pm
- Bio/Seq/LargePrimarySeq.pm
- Bio/Seq/LargeSeq.pm
- Bio/Seq/Meta.pm
- Bio/Seq/Meta/Array.pm
- Bio/Seq/MetaI.pm
- Bio/Seq/PrimaryQual.pm
- Bio/Seq/PrimedSeq.pm
- Bio/Seq/QualI.pm
- Bio/Seq/RichSeq.pm
- Bio/Seq/RichSeqI.pm
- Bio/Seq/SeqBuilder.pm
- Bio/Seq/SeqFactory.pm
- Bio/Seq/SeqFastaSpeedFactory.pm
- Bio/Seq/SeqWithQuality.pm
- Bio/Seq/SequenceTrace.pm
- Bio/Seq/TraceI.pm
- Bio/SeqAnalysisParserI.pm
- Bio/SeqFeature/AnnotationAdaptor.pm
- Bio/SeqFeature/Collection.pm
- Bio/SeqFeature/CollectionI.pm
- Bio/SeqFeature/Computation.pm
- Bio/SeqFeature/FeaturePair.pm
- Bio/SeqFeature/Gene/Exon.pm
- Bio/SeqFeature/Gene/ExonI.pm
- Bio/SeqFeature/Gene/GeneStructure.pm
- Bio/SeqFeature/Gene/GeneStructureI.pm
- Bio/SeqFeature/Gene/Intron.pm
- Bio/SeqFeature/Gene/NC_Feature.pm
- Bio/SeqFeature/Gene/Poly_A_site.pm
- Bio/SeqFeature/Gene/Promoter.pm
- Bio/SeqFeature/Gene/Transcript.pm
- Bio/SeqFeature/Gene/TranscriptI.pm
- Bio/SeqFeature/Gene/UTR.pm
- Bio/SeqFeature/Generic.pm
- Bio/SeqFeature/PositionProxy.pm
- Bio/SeqFeature/Primer.pm
- Bio/SeqFeature/SiRNA/Oligo.pm
- Bio/SeqFeature/SiRNA/Pair.pm
- Bio/SeqFeature/Similarity.pm
- Bio/SeqFeature/SimilarityPair.pm
- Bio/SeqFeature/Tools/TypeMapper.pm
- Bio/SeqFeature/Tools/Unflattener.pm
- Bio/SeqFeatureI.pm
- Bio/SeqI.pm
- Bio/SeqIO.pm
- Bio/SeqIO/FTHelper.pm
- Bio/SeqIO/MultiFile.pm
- Bio/SeqIO/abi.pm
- Bio/SeqIO/ace.pm
- Bio/SeqIO/alf.pm
- Bio/SeqIO/asciitree.pm
- Bio/SeqIO/bsml.pm
- Bio/SeqIO/chadoxml.pm
- Bio/SeqIO/ctf.pm
- Bio/SeqIO/embl.pm
- Bio/SeqIO/exp.pm
- Bio/SeqIO/fasta.pm
- Bio/SeqIO/fastq.pm
- Bio/SeqIO/game.pm
- Bio/SeqIO/game/featHandler.pm
- Bio/SeqIO/game/gameHandler.pm
- Bio/SeqIO/game/gameSubs.pm
- Bio/SeqIO/game/gameWriter.pm
- Bio/SeqIO/game/seqHandler.pm
- Bio/SeqIO/gcg.pm
- Bio/SeqIO/genbank.pm
- Bio/SeqIO/kegg.pm
- Bio/SeqIO/largefasta.pm
- Bio/SeqIO/locuslink.pm
- Bio/SeqIO/metafasta.pm
- Bio/SeqIO/phd.pm
- Bio/SeqIO/pir.pm
- Bio/SeqIO/pln.pm
- Bio/SeqIO/qual.pm
- Bio/SeqIO/raw.pm
- Bio/SeqIO/scf.pm
- Bio/SeqIO/swiss.pm
- Bio/SeqIO/tab.pm
- Bio/SeqIO/tigr.pm
- Bio/SeqIO/ztr.pm
- Bio/SeqUtils.pm
- Bio/SimpleAlign.pm
- Bio/SimpleAnalysisI.pm
- Bio/Species.pm
- Bio/Structure/Atom.pm
- Bio/Structure/Chain.pm
- Bio/Structure/Entry.pm
- Bio/Structure/IO.pm
- Bio/Structure/IO/pdb.pm
- Bio/Structure/Model.pm
- Bio/Structure/Residue.pm
- Bio/Structure/SecStr/DSSP/Res.pm
- Bio/Structure/SecStr/STRIDE/Res.pm
- Bio/Structure/StructureI.pm
- Bio/Symbol/Alphabet.pm
- Bio/Symbol/AlphabetI.pm
- Bio/Symbol/DNAAlphabet.pm
- Bio/Symbol/ProteinAlphabet.pm
- Bio/Symbol/README.Symbol
- Bio/Symbol/Symbol.pm
- Bio/Symbol/SymbolI.pm
- Bio/Taxonomy.pm
- Bio/Taxonomy/FactoryI.pm
- Bio/Taxonomy/Node.pm
- Bio/Taxonomy/Taxon.pm
- Bio/Taxonomy/Tree.pm
- Bio/Tools/AlignFactory.pm
- Bio/Tools/Alignment/Consed.pm
- Bio/Tools/Alignment/Trim.pm
- Bio/Tools/Analysis/DNA/ESEfinder.pm
- Bio/Tools/Analysis/Protein/Domcut.pm
- Bio/Tools/Analysis/Protein/ELM.pm
- Bio/Tools/Analysis/Protein/GOR4.pm
- Bio/Tools/Analysis/Protein/HNN.pm
- Bio/Tools/Analysis/Protein/Mitoprot.pm
- Bio/Tools/Analysis/Protein/NetPhos.pm
- Bio/Tools/Analysis/Protein/Scansite.pm
- Bio/Tools/Analysis/Protein/Sopma.pm
- Bio/Tools/Analysis/SimpleAnalysisBase.pm
- Bio/Tools/AnalysisResult.pm
- Bio/Tools/BPbl2seq.pm
- Bio/Tools/BPlite.pm
- Bio/Tools/BPlite/HSP.pm
- Bio/Tools/BPlite/Iteration.pm
- Bio/Tools/BPlite/Sbjct.pm
- Bio/Tools/BPpsilite.pm
- Bio/Tools/Blast.pm
- Bio/Tools/Blast/CHANGES
- Bio/Tools/Blast/HSP.pm
- Bio/Tools/Blast/HTML.pm
- Bio/Tools/Blast/README
- Bio/Tools/Blast/Sbjct.pm
- Bio/Tools/Blat.pm
- Bio/Tools/CodonTable.pm
- Bio/Tools/Coil.pm
- Bio/Tools/ECnumber.pm
- Bio/Tools/EMBOSS/Palindrome.pm
- Bio/Tools/EPCR.pm
- Bio/Tools/ESTScan.pm
- Bio/Tools/Eponine.pm
- Bio/Tools/Est2Genome.pm
- Bio/Tools/FootPrinter.pm
- Bio/Tools/GFF.pm
- Bio/Tools/Gel.pm
- Bio/Tools/Geneid.pm
- Bio/Tools/Genemark.pm
- Bio/Tools/Genewise.pm
- Bio/Tools/Genomewise.pm
- Bio/Tools/Genscan.pm
- Bio/Tools/Glimmer.pm
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- t/AAChange.t
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- t/data/expected.blast.out
- t/data/factor7.embl
- t/data/footprinter.out
- t/data/geneid_1.0.out
- t/data/genemark.out
- t/data/genewise.out
- t/data/genewise_output.paracel_btk
- t/data/genomewise.out
- t/data/genomic-seq.epcr
- t/data/genomic-seq.fasta
- t/data/genomic-seq.genscan
- t/data/genomic-seq.mzef
- t/data/gf-s71.needle
- t/data/glimmer.out
- t/data/hemoglobinA.meg
- t/data/hg16_chroms.gff
- t/data/hmmpfam.out
- t/data/hmmsearch.out
- t/data/hs_est.est2genome
- t/data/hs_fugu.newick
- t/data/hs_owlmonkey.fas
- t/data/hs_owlmonkey.fasta
- t/data/hsinsulin.blastcl3.blastn
- t/data/humor.maf
- t/data/humts1.pal
- t/data/insulin.water
- t/data/interpro_short.xml
- t/data/lucy.info
- t/data/lucy.qual
- t/data/lucy.seq
- t/data/lucy.stderr
- t/data/lysozyme6.protml
- t/data/lysozyme6.simple.protml
- t/data/mapmaker.out
- t/data/mast.dat
- t/data/megablast_output.paracel_btk
- t/data/meme.dat
- t/data/mpath.ontology.test
- t/data/multi_1.fa
- t/data/multi_2.fa
- t/data/multi_blast.bls
- t/data/multifa.seq
- t/data/multiseq.bls
- t/data/mus.bls.xml
- t/data/mutations.dat
- t/data/mutations.xml
- t/data/myco_sites.gff
- t/data/nei_gojobori_test.aln
- t/data/neighbor.dist (manifest skip)
- t/data/no-genes.genscan
- t/data/no_hsps.blastp
- t/data/noninterleaved.phy
- t/data/omim_genemap_test
- t/data/omim_text_test
- t/data/pdb1bpt.ent
- t/data/phi.out
- t/data/phipsi.out
- t/data/phredfile.phd
- t/data/phylipdist-36.out
- t/data/phylipdist.out
- t/data/pictogram.fa
- t/data/plague_yeast.bls.xml
- t/data/polymorphism.dat
- t/data/polymorphism.xml
- t/data/popgen_saureus.dat
- t/data/popgen_saureus.multidat
- t/data/popstats.prettybase
- t/data/primedseq.fa
- t/data/primer3_infile.txt
- t/data/primer3_outfile.txt
- t/data/primer3_output.txt
- t/data/promoterwise.out
- t/data/protpars.phy
- t/data/psiblastreport.out
- t/data/qrna-relloc.out
- t/data/qualfile.qual
- t/data/rebase.itype2
- t/data/rebase.withrefm
- t/data/registry/bdb/seqdatabase.ini
- t/data/registry/flat/seqdatabase.ini
- t/data/repeatmasker.fa.out
- t/data/revcomp_mrna.gb
- t/data/roa1.dat
- t/data/roa1.genbank
- t/data/roa1.swiss
- t/data/sbay_c545-yeast.BLASTZ.PSL
- t/data/seqdatabase.ini
- t/data/seqfile.pir
- t/data/seqs.fas
- t/data/sequencefamily.dat
- t/data/short.blx
- t/data/sim4.for.for
- t/data/sim4.for.rev
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- t/data/sofa.ontology
- t/data/sparsealn.needle
- t/data/stress_test_medline.xml
- t/data/stress_test_pubmed.xml
- t/data/swiss.dat
- t/data/swisspfam.data
- t/data/test.ace
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- t/data/test.genbank
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- t/data/test.mase
- t/data/test.metafasta
- t/data/test.nh
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- t/data/test.swiss
- t/data/test.tab
- t/data/test.txt
- t/data/test.waba
- t/data/test_badlf.gcg
- t/data/testaln.aln
- t/data/testaln.fasta
- t/data/testaln.mase
- t/data/testaln.metafasta
- t/data/testaln.msf
- t/data/testaln.nexus
- t/data/testaln.pfam
- t/data/testaln.phylip
- t/data/testaln.prodom
- t/data/testaln.selex
- t/data/testaln.stockholm
- t/data/testdat.exonerate
- t/data/testdbaccnums.out
- t/data/testfuzzy.genbank
- t/data/transfac.dat
- t/data/unigene.data
- t/data/version2.scf
- t/data/version3.scf
- t/data/worm_fam_2785.cdna
- t/data/yn00.mlc
- t/ePCR.t
- t/est2genome.t
- t/flat.t
- t/game.t
- t/hmmer.t
- t/largefasta.t
- t/largepseq.t
- t/lucy.t
- t/multiple_fasta.t
- t/pICalculator.t
- t/phd.t
- t/primaryqual.t
- t/primedseq.t
- t/primer3.t
- t/psm.t
- t/qual.t
- t/scf.t
- t/seqfeaturePrimer.t
- t/sequencetrace.t
- t/seqwithquality.t
- t/simpleGOparser.t
- t/sirna.t
- t/splicedseq.t
- t/testformats.pl
- t/trim.t
- t/tutorial.t
