Files

• Build.PL
• MANIFEST
• META.json
• META.yml
• bin/bamsurgeon
• bin/generate_signature.pl
• bin/germline.pl
• bin/get_coverage.R
• bin/make_yaml_het.pl
• lib/NGS/Tools/BAMSurgeon.pm
• lib/NGS/Tools/BAMSurgeon/Germline.pm
• lib/NGS/Tools/BAMSurgeon/Helper.pm
• lib/NGS/Tools/BAMSurgeon/Merge.pm
• lib/NGS/Tools/BAMSurgeon/Somatic.pm
• share/cancer_mut_vary.yaml
• share/cancer_sig_vary.yaml
• share/cancer_sigmut.yaml
• share/config.yaml
• share/germ_mut.yaml
• share/imputed_byref.csv
• share/replicationtime_mutationrate.csv
• share/signatures.txt
• share/somatic.yaml
• share/template.yaml
• t/00-bamsurgeon.t