Kwalitee Issues

has_license_in_source_file

Add =head1 LICENSE and the text of the license to the main module in your code.

has_readme

Add a README to the distribution. It should contain a quick description of your module and how to install it.

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::DB::GFF, Bio::DB::GFF::Adaptor::berkeleydb, Bio::DB::GFF::Adaptor::berkeleydb::iterator, Bio::DB::GFF::Adaptor::biofetch, Bio::DB::GFF::Adaptor::biofetch_oracle, Bio::DB::GFF::Adaptor::dbi, Bio::DB::GFF::Adaptor::dbi::caching_handle, Bio::DB::GFF::Adaptor::dbi::iterator, Bio::DB::GFF::Adaptor::dbi::mysql, Bio::DB::GFF::Adaptor::dbi::mysqlcmap, Bio::DB::GFF::Adaptor::dbi::mysqlopt, Bio::DB::GFF::Adaptor::dbi::oracle, Bio::DB::GFF::Adaptor::dbi::pg, Bio::DB::GFF::Adaptor::dbi::pg_fts, Bio::DB::GFF::Adaptor::memory, Bio::DB::GFF::Adaptor::memory::feature_serializer, Bio::DB::GFF::Adaptor::memory::iterator, Bio::DB::GFF::Aggregator, Bio::DB::GFF::Aggregator::alignment, Bio::DB::GFF::Aggregator::clone, Bio::DB::GFF::Aggregator::coding, Bio::DB::GFF::Aggregator::gene, Bio::DB::GFF::Aggregator::match, Bio::DB::GFF::Aggregator::none, Bio::DB::GFF::Aggregator::orf, Bio::DB::GFF::Aggregator::processed_transcript, Bio::DB::GFF::Aggregator::so_transcript, Bio::DB::GFF::Aggregator::transcript, Bio::DB::GFF::Aggregator::ucsc_acembly, Bio::DB::GFF::Aggregator::ucsc_ensgene, Bio::DB::GFF::Aggregator::ucsc_genscan, Bio::DB::GFF::Aggregator::ucsc_refgene, Bio::DB::GFF::Aggregator::ucsc_sanger22, Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo, Bio::DB::GFF::Aggregator::ucsc_softberry, Bio::DB::GFF::Aggregator::ucsc_twinscan, Bio::DB::GFF::Aggregator::ucsc_unigene, Bio::DB::GFF::Featname, Bio::DB::GFF::Feature, Bio::DB::GFF::Homol, Bio::DB::GFF::RelSegment, Bio::DB::GFF::Segment, Bio::DB::GFF::Typename

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
Bio::DB::GFF Storage and retrieval of sequence annotation data 1.007003 metacpan
Bio::DB::GFF::Adaptor::berkeleydb Bio::DB::GFF database adaptor for in-memory databases 1.007003 metacpan
Bio::DB::GFF::Adaptor::berkeleydb::iterator iterator for Bio::DB::GFF::Adaptor::berkeleydb 1.007003 metacpan
Bio::DB::GFF::Adaptor::biofetch Cache BioFetch objects in a Bio::DB::GFF database 1.007003 metacpan
Bio::DB::GFF::Adaptor::biofetch_oracle Cache BioFetch objects in a Bio::DB::GFF database 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi Database adaptor for DBI (SQL) databases 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::caching_handle Cache for database handles 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::iterator iterator for Bio::DB::GFF::Adaptor::dbi 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::mysql Database adaptor for a specific mysql schema 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::mysqlcmap Database adaptor for an integraded CMap/GBrowse mysql schema 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::mysqlopt Deprecated database adaptor 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::oracle Database adaptor for a specific oracle schema 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::pg Database adaptor for a specific postgres schema 1.007003 metacpan
Bio::DB::GFF::Adaptor::dbi::pg_fts Database adaptor for a specific postgres schema with a TSearch2 implementation 1.007003 metacpan
Bio::DB::GFF::Adaptor::memory Bio::DB::GFF database adaptor for in-memory databases 1.007003 metacpan
Bio::DB::GFF::Adaptor::memory::feature_serializer utility methods for serializing and deserializing GFF features 1.007003 metacpan
Bio::DB::GFF::Adaptor::memory::iterator iterator for Bio::DB::GFF::Adaptor::memory 1.007003 metacpan
Bio::DB::GFF::Aggregator Aggregate GFF groups into composite features 1.007003 metacpan
Bio::DB::GFF::Aggregator::alignment Alignment aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::clone Clone aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::coding The Coding Region Aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::gene Sequence Ontology Geene 1.007003 metacpan
Bio::DB::GFF::Aggregator::match Match aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::none No aggregation 1.007003 metacpan
Bio::DB::GFF::Aggregator::orf An aggregator for orf regions 1.007003 metacpan
Bio::DB::GFF::Aggregator::processed_transcript Sequence Ontology Transcript 1.007003 metacpan
Bio::DB::GFF::Aggregator::so_transcript Sequence Ontology Transcript 1.007003 metacpan
Bio::DB::GFF::Aggregator::transcript Transcript aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_acembly UCSC acembly aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_ensgene UCSC ensGene aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_genscan UCSC genscan aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_refgene UCSC refGene aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_sanger22 UCSC sanger22 aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo UCSC sanger22pseudo aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_softberry UCSC softberry aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_twinscan UCSC twinscan aggregator 1.007003 metacpan
Bio::DB::GFF::Aggregator::ucsc_unigene UCSC UniGene aggregator 1.007003 metacpan
Bio::DB::GFF::Featname The name of a feature 1.007003 metacpan
Bio::DB::GFF::Feature A relative segment identified by a feature type 1.007003 metacpan
Bio::DB::GFF::Homol A segment of DNA that is homologous to another 1.007003 metacpan
Bio::DB::GFF::RelSegment Sequence segment with relative coordinate support 1.007003 metacpan
Bio::DB::GFF::Segment Simple DNA segment object 1.007003 metacpan
Bio::DB::GFF::Typename The name of a feature type 1.007003 metacpan

Provides

Name File View
Bio::DB::GFF::Adaptor::dbi::faux_dbh lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm metacpan
Bio::DB::GFF::FeatureIterator lib/Bio/DB/GFF.pm metacpan
Bio::DB::GFF::ID_Iterator lib/Bio/DB/GFF.pm metacpan
FeatureStore lib/Bio/DB/GFF/Adaptor/berkeleydb.pm metacpan

Other Files

Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
dist.ini metacpan