Bio-DB-SeqFeature 1.7.5
- Released by
- CJFIELDS
- Version
- Release Date
- 2024-09-28
- Kwalitee
- 134.38
- Core Kwalitee
- 87.5
- LINKS
Bio-DB-SeqFeature 1.7.5 Latest
Kwalitee Issues
- has_readme
-
Add a README to the distribution. It should contain a quick description of your module and how to install it.
- has_license_in_source_file
-
Add =head1 LICENSE and the text of the license to the main module in your code.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::SeqFeature::NormalizedFeatureI, Bio::DB::SeqFeature::NormalizedTableFeatureI, Bio::DB::SeqFeature::Store::DBI::Iterator
- prereq_matches_use
-
List all used modules in META.yml requires
Error:
- DBD::Pg
- DBD::SQLite
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_known_license_in_source_file
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Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::SeqFeature, Bio::DB::SeqFeature::NormalizedFeature, Bio::DB::SeqFeature::NormalizedFeatureI, Bio::DB::SeqFeature::NormalizedTableFeatureI, Bio::DB::SeqFeature::Segment, Bio::DB::SeqFeature::Store::DBI::Iterator, Bio::DB::SeqFeature::Store::DBI::MariaDB, Bio::DB::SeqFeature::Store::DBI::Pg, Bio::DB::SeqFeature::Store::DBI::SQLite, Bio::DB::SeqFeature::Store::DBI::mysql, Bio::DB::SeqFeature::Store::FeatureFileLoader, Bio::DB::SeqFeature::Store::GFF2Loader, Bio::DB::SeqFeature::Store::GFF3Loader, Bio::DB::SeqFeature::Store::LoadHelper, Bio::DB::SeqFeature::Store::Loader, Bio::DB::SeqFeature::Store::bdb, Bio::DB::SeqFeature::Store::berkeleydb, Bio::DB::SeqFeature::Store::berkeleydb3, Bio::DB::SeqFeature::Store::memory
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 1.007005,1.12
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::DB::SeqFeature | Normalized feature for use with Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::NormalizedFeature | Normalized feature for use with Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::NormalizedFeatureI | Interface for normalized features | 1.007005 | metacpan |
| Bio::DB::SeqFeature::NormalizedTableFeatureI | Interface for normalized features whose hierarchy is stored in a table | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Segment | Location-based access to genome annotation data | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store | Storage and retrieval of sequence annotation data | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::DBI::Iterator | utility methods for creating and iterating over SeqFeature records | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::DBI::MariaDB | MariaDB implementation of Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::DBI::Pg | PostgreSQL implementation of Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::DBI::SQLite | SQLite implementation of Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::DBI::mysql | Mysql implementation of Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::FeatureFileLoader | feature file loader for Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::GFF2Loader | GFF2 file loader for Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::GFF3Loader | GFF3 file loader for Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::LoadHelper | Internal utility for Bio::DB::SeqFeature::Store | 1.12 | metacpan |
| Bio::DB::SeqFeature::Store::Loader | Loader | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::bdb | fetch and store objects from a BerkeleyDB | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::berkeleydb | Storage and retrieval of sequence annotation data in Berkeleydb files | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::berkeleydb3 | Storage and retrieval of sequence annotation data in Berkeleydb files | 1.007005 | metacpan |
| Bio::DB::SeqFeature::Store::memory | In-memory implementation of Bio::DB::SeqFeature::Store | 1.007005 | metacpan |
Provides
| Name | File | View |
|---|---|---|
| Bio::DB::Fasta::Subdir | lib/Bio/DB/SeqFeature/Store/berkeleydb.pm | metacpan |
| Bio::DB::SeqFeature::Store::FeatureIterator | lib/Bio/DB/SeqFeature/Store.pm | metacpan |
| Bio::DB::SeqFeature::Store::berkeleydb::Iterator | lib/Bio/DB/SeqFeature/Store/berkeleydb.pm | metacpan |
| Bio::DB::SeqFeature::Store::memory::Iterator | lib/Bio/DB/SeqFeature/Store/memory.pm | metacpan |