BioPerl-db 1.5.9_2

Released by
CJFIELDS
Version
Release Date
2009-02-11
Kwalitee
143.75
Core Kwalitee
93.75
LINKS

Errors

configure_prereq_matches_use
  • Bio::Root::Build
extracts_nicely
expected BioPerl-db-1.5.9_2 but BioPerl-db-1.5.9._2 is found
prereq_matches_use
  • Bio::Annotation::AnnotationFactory
  • Bio::Annotation::Comment
  • Bio::Annotation::DBLink
  • Bio::Annotation::Reference
  • Bio::Annotation::SimpleValue
  • Bio::Cluster::ClusterFactory
  • Bio::Cluster::UniGene
  • Bio::DB::RandomAccessI
  • Bio::DB::SeqI
  • Bio::DescribableI
  • Bio::Factory::ObjectFactoryI
  • Bio::IdentifiableI
  • Bio::Location::Simple
  • Bio::Location::Split
  • Bio::Ontology::Ontology
  • Bio::Ontology::Path
  • Bio::Ontology::Relationship
  • Bio::Ontology::Term
  • Bio::PrimarySeq
  • Bio::PrimarySeqI
  • Bio::Root::IO
  • Bio::Root::Root
  • Bio::Root::RootI
  • Bio::Seq::SeqFactory
  • Bio::SeqFeature::AnnotationAdaptor
  • Bio::SeqFeature::Generic
  • Bio::SeqFeatureI
  • Bio::SeqI
  • Bio::Species
  • DBD::Oracle
proper_libs
Bio/BioEntry.pm, Bio/DB/BioDB.pm, Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm, Bio/DB/BioSQL/BaseDriver.pm, Bio/DB/BioSQL/BasePersistenceAdaptor.pm, Bio/DB/BioSQL/BioNamespaceAdaptor.pm, Bio/DB/BioSQL/BiosequenceAdaptor.pm, Bio/DB/BioSQL/ClusterAdaptor.pm, Bio/DB/BioSQL/CommentAdaptor.pm, Bio/DB/BioSQL/DBAdaptor.pm, Bio/DB/BioSQL/DBLinkAdaptor.pm, Bio/DB/BioSQL/LocationAdaptor.pm, Bio/DB/BioSQL/MultiDB.pm, Bio/DB/BioSQL/OBDA.pm, Bio/DB/BioSQL/OntologyAdaptor.pm, Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm, Bio/DB/BioSQL/PathAdaptor.pm, Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm, Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm, Bio/DB/BioSQL/PrimarySeqAdaptor.pm, Bio/DB/BioSQL/ReferenceAdaptor.pm, Bio/DB/BioSQL/RelationshipAdaptor.pm, Bio/DB/BioSQL/SeqAdaptor.pm, Bio/DB/BioSQL/SeqFeatureAdaptor.pm, Bio/DB/BioSQL/SimpleValueAdaptor.pm, Bio/DB/BioSQL/SpeciesAdaptor.pm, Bio/DB/BioSQL/TermAdaptor.pm, Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm, Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm, Bio/DB/CacheServer/SeqDB.pm, Bio/DB/DBAdaptorI.pm, Bio/DB/DBContextI.pm, Bio/DB/DBD.pm, Bio/DB/DBI.pm, Bio/DB/DBI/Oracle.pm, Bio/DB/DBI/Pg.pm, Bio/DB/DBI/Transaction.pm, Bio/DB/DBI/TransactionListener.pm, Bio/DB/DBI/base.pm, Bio/DB/DBI/mysql.pm, Bio/DB/EasyArgv.pm, Bio/DB/PersistenceAdaptorI.pm, Bio/DB/Persistent/BioNamespace.pm, Bio/DB/Persistent/ObjectRelMapperI.pm, Bio/DB/Persistent/PersistentObject.pm, Bio/DB/Persistent/PersistentObjectFactory.pm, Bio/DB/Persistent/PrimarySeq.pm, Bio/DB/Persistent/Seq.pm, Bio/DB/Persistent/SeqFeature.pm, Bio/DB/PersistentObjectI.pm, Bio/DB/Query/AbstractQuery.pm, Bio/DB/Query/BioQuery.pm, Bio/DB/Query/DBQueryResult.pm, Bio/DB/Query/PrebuiltResult.pm, Bio/DB/Query/QueryConstraint.pm, Bio/DB/Query/QueryResultI.pm, Bio/DB/Query/SqlGenerator.pm, Bio/DB/Query/SqlQuery.pm, Bio/DB/SimpleDBContext.pm
test_prereq_matches_use
  • Bio::Root::Test
use_warnings
Bio::BioEntry, Bio::DB::BioDB, Bio::DB::BioSQL::AnnotationCollectionAdaptor, Bio::DB::BioSQL::BaseDriver, Bio::DB::BioSQL::BasePersistenceAdaptor, Bio::DB::BioSQL::BioNamespaceAdaptor, Bio::DB::BioSQL::BiosequenceAdaptor, Bio::DB::BioSQL::ClusterAdaptor, Bio::DB::BioSQL::CommentAdaptor, Bio::DB::BioSQL::DBAdaptor, Bio::DB::BioSQL::DBLinkAdaptor, Bio::DB::BioSQL::LocationAdaptor, Bio::DB::BioSQL::MultiDB, Bio::DB::BioSQL::OBDA, Bio::DB::BioSQL::OntologyAdaptor, Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Oracle::PathAdaptorDriver, Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver, Bio::DB::BioSQL::Oracle::TermAdaptorDriver, Bio::DB::BioSQL::PathAdaptor, Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Pg::PathAdaptorDriver, Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver, Bio::DB::BioSQL::Pg::TermAdaptorDriver, Bio::DB::BioSQL::PrimarySeqAdaptor, Bio::DB::BioSQL::ReferenceAdaptor, Bio::DB::BioSQL::RelationshipAdaptor, Bio::DB::BioSQL::SeqAdaptor, Bio::DB::BioSQL::SeqFeatureAdaptor, Bio::DB::BioSQL::SimpleValueAdaptor, Bio::DB::BioSQL::SpeciesAdaptor, Bio::DB::BioSQL::TermAdaptor, Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver, Bio::DB::BioSQL::mysql::PathAdaptorDriver, Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver, Bio::DB::BioSQL::mysql::TermAdaptorDriver, Bio::DB::CacheServer::SeqDB, Bio::DB::DBAdaptorI, Bio::DB::DBContextI, Bio::DB::DBD, Bio::DB::DBI, Bio::DB::DBI::Oracle, Bio::DB::DBI::Pg, Bio::DB::DBI::Transaction, Bio::DB::DBI::TransactionListener, Bio::DB::DBI::base, Bio::DB::DBI::mysql, Bio::DB::EasyArgv, Bio::DB::PersistenceAdaptorI, Bio::DB::Persistent::BioNamespace, Bio::DB::Persistent::PersistentObject, Bio::DB::Persistent::PersistentObjectFactory, Bio::DB::Persistent::PrimarySeq, Bio::DB::Persistent::Seq, Bio::DB::Persistent::SeqFeature, Bio::DB::PersistentObjectI, Bio::DB::Query::AbstractQuery, Bio::DB::Query::BioQuery, Bio::DB::Query::DBQueryResult, Bio::DB::Query::PrebuiltResult, Bio::DB::Query::QueryConstraint, Bio::DB::Query::QueryResultI, Bio::DB::Query::SqlGenerator, Bio::DB::Query::SqlQuery, Bio::DB::SimpleDBContext