Files

• Changes
• INSTALL
• LICENSE
• MANIFEST
• MANIFEST.SKIP
• META.yml
• Makefile.PL
• README
• bin/compress-db.pl
• bin/debrief-42.pl
• bin/forty-two.pl
• bin/leel.pl
• bin/yaml-generator-42.pl
• doc/doc.latex
• doc/forty-two-manual.pdf
• doc/forty-two-scheme.pdf
• lib/Bio/MUST/Apps/Debrief42.pm
• lib/Bio/MUST/Apps/Debrief42/OrgReport.pm
• lib/Bio/MUST/Apps/Debrief42/RunReport.pm
• lib/Bio/MUST/Apps/Debrief42/TaxReport.pm
• lib/Bio/MUST/Apps/Debrief42/TaxReport/NewSeq.pm
• lib/Bio/MUST/Apps/FortyTwo.pm
• lib/Bio/MUST/Apps/FortyTwo/AliProcessor.pm
• lib/Bio/MUST/Apps/FortyTwo/Manual.pod
• lib/Bio/MUST/Apps/FortyTwo/OrgProcessor.pm
• lib/Bio/MUST/Apps/FortyTwo/RunProcessor.pm
• lib/Bio/MUST/Apps/Leel.pm
• lib/Bio/MUST/Apps/Leel/AliProcessor.pm
• lib/Bio/MUST/Apps/Leel/OrgProcessor.pm
• lib/Bio/MUST/Apps/Leel/RunProcessor.pm
• lib/Bio/MUST/Apps/Roles/AliProcable.pm
• lib/Bio/MUST/Apps/Roles/Configable.pm
• lib/Bio/MUST/Apps/Roles/OrgProcable.pm
• lib/Bio/MUST/Apps/Roles/RunProcable.pm
• lib/Bio/MUST/Apps/SlaveAligner/Local.pm
• t/forty_two.t
• test/42-t-merge-orthologues.log
• test/MSAs/EOG700KXR-42-nuc-exo.ali
• test/MSAs/EOG700KXR-42-nuc-exo.tax-report
• test/MSAs/EOG700KXR-42-nuc-simple.ali
• test/MSAs/EOG700KXR-42-nuc-simple.tax-report
• test/MSAs/EOG700KXR-42-prot-simple.ali
• test/MSAs/EOG700KXR-42-prot-simple.tax-report
• test/MSAs/EOG700KXR-42-prot-tax.ali
• test/MSAs/EOG700KXR-42-prot-tax.tax-report
• test/MSAs/EOG700KXR.ali
• test/MSAs/EOG700KXR.old
• test/MSAs/EOG700KXZ-42-nuc-exo.ali
• test/MSAs/EOG700KXZ-42-nuc-exo.tax-report
• test/MSAs/EOG700KXZ-42-nuc-simple.ali
• test/MSAs/EOG700KXZ-42-nuc-simple.tax-report
• test/MSAs/EOG700KXZ-42-prot-simple.ali
• test/MSAs/EOG700KXZ-42-prot-simple.tax-report
• test/MSAs/EOG700KXZ-42-prot-tax.ali
• test/MSAs/EOG700KXZ-42-prot-tax.tax-report
• test/MSAs/EOG700KXZ.ali
• test/MSAs/EOG700KXZ.old
• test/MSAs/queries.idl
• test/candidates/genomes/Apis_mellifera.nhr
• test/candidates/genomes/Apis_mellifera.nin
• test/candidates/genomes/Apis_mellifera.nog
• test/candidates/genomes/Apis_mellifera.nsd
• test/candidates/genomes/Apis_mellifera.nsi
• test/candidates/genomes/Apis_mellifera.nsq
• test/candidates/genomes/Harpegnathos_saltator.nhr
• test/candidates/genomes/Harpegnathos_saltator.nin
• test/candidates/genomes/Harpegnathos_saltator.nog
• test/candidates/genomes/Harpegnathos_saltator.nsd
• test/candidates/genomes/Harpegnathos_saltator.nsi
• test/candidates/genomes/Harpegnathos_saltator.nsq
• test/candidates/genomes/nuc-bank-mapper.idm
• test/candidates/proteomes/Apis_mellifera.phr
• test/candidates/proteomes/Apis_mellifera.pin
• test/candidates/proteomes/Apis_mellifera.pog
• test/candidates/proteomes/Apis_mellifera.psd
• test/candidates/proteomes/Apis_mellifera.psi
• test/candidates/proteomes/Apis_mellifera.psq
• test/candidates/proteomes/Harpegnathos_saltator.phr
• test/candidates/proteomes/Harpegnathos_saltator.pin
• test/candidates/proteomes/Harpegnathos_saltator.pog
• test/candidates/proteomes/Harpegnathos_saltator.psd
• test/candidates/proteomes/Harpegnathos_saltator.psi
• test/candidates/proteomes/Harpegnathos_saltator.psq
• test/candidates/proteomes/prot-bank-mapper.idm
• test/config-42-nuc-exo.yaml
• test/config-42-nuc-simple.yaml
• test/config-42-prot-simple.yaml
• test/config-42-prot-tax.yaml
• test/ref_banks/Camponotus_floridanus.phr
• test/ref_banks/Camponotus_floridanus.pin
• test/ref_banks/Camponotus_floridanus.psd
• test/ref_banks/Camponotus_floridanus.psi
• test/ref_banks/Camponotus_floridanus.psq
• test/ref_banks/Nasonia_vitripennis.phr
• test/ref_banks/Nasonia_vitripennis.pin
• test/ref_banks/Nasonia_vitripennis.psd
• test/ref_banks/Nasonia_vitripennis.psi
• test/ref_banks/Nasonia_vitripennis.psq
• test/ref_banks/Tribolium_castaneum.phr
• test/ref_banks/Tribolium_castaneum.pin
• test/ref_banks/Tribolium_castaneum.psd
• test/ref_banks/Tribolium_castaneum.psi
• test/ref_banks/Tribolium_castaneum.psq
• test/ref_banks/ref-bank-mapper.idm
• test/taxdump-mini/cachedb.bin
• test/taxdump-mini/delnodes.dmp
• test/taxdump-mini/how-to-build-taxdump-mini.log
• test/taxdump-mini/lineage_elements.idl
• test/taxdump-mini/merged.dmp
• test/taxdump-mini/names.dmp
• test/taxdump-mini/nodes.dmp