Files

• Changes
• INSTALL
• LICENSE
• MANIFEST
• MANIFEST.SKIP
• META.yml
• Makefile.PL
• README
• lib/Bio/MUST/Drivers.pm
• lib/Bio/MUST/Drivers/Blast.pm
• lib/Bio/MUST/Drivers/Blast/Database.pm
• lib/Bio/MUST/Drivers/Blast/Database/Temporary.pm
• lib/Bio/MUST/Drivers/Cap3.pm
• lib/Bio/MUST/Drivers/CdHit.pm
• lib/Bio/MUST/Drivers/ClustalO.pm
• lib/Bio/MUST/Drivers/Exonerate.pm
• lib/Bio/MUST/Drivers/Exonerate/Aligned.pm
• lib/Bio/MUST/Drivers/Exonerate/Sugar.pm
• lib/Bio/MUST/Drivers/Hmmer.pm
• lib/Bio/MUST/Drivers/Hmmer/Model.pm
• lib/Bio/MUST/Drivers/Hmmer/Model/Database.pm
• lib/Bio/MUST/Drivers/Hmmer/Model/Temporary.pm
• lib/Bio/MUST/Drivers/Mafft.pm
• lib/Bio/MUST/Drivers/Roles/Blastable.pm
• lib/Bio/MUST/Drivers/Roles/Hmmerable.pm
• lib/Bio/MUST/Drivers/Utils.pm
• lib/Bio/MUST/Provision/Blast.pm
• lib/Bio/MUST/Provision/Cap3.pm
• lib/Bio/MUST/Provision/CdHit.pm
• lib/Bio/MUST/Provision/ClustalO.pm
• lib/Bio/MUST/Provision/Exonerate.pm
• lib/Bio/MUST/Provision/Hmmer.pm
• lib/Bio/MUST/Provision/Mafft.pm
• t/author-critic.t
• t/author-pod-syntax.t
• t/author-portability.t
• t/blast.t
• t/cap3.t
• t/cd_hit.t
• t/clustalo.t
• t/exo_aligned.t
• t/exonerate.t
• t/hmmer.t
• t/mafft.t
• test/aligned-cons.fasta
• test/aligned-nuc.ali
• test/aligned-nuc.fasta
• test/aligned-nuc.hmm
• test/aligned-nuc_domtable.out
• test/aligned-nuc_notextw.out
• test/aligned-nuc_table.out
• test/aligned-nuc_target.fasta
• test/aligned.ali
• test/aligned.fasta
• test/aligned.hmm
• test/aligned_degap.fasta
• test/aligned_domtable.out
• test/aligned_domtable.out.2015
• test/aligned_domtable.out.321
• test/aligned_no.hmm
• test/aligned_notextw.out
• test/aligned_notextw.out.2015
• test/aligned_notextw.out.321
• test/aligned_table.out
• test/aligned_table.out.2015
• test/aligned_table.out.321
• test/cdHit.in.fasta
• test/cdHit.out.clstr
• test/cdHit.out.fasta
• test/cdHit.out.groups
• test/ciliates.dna
• test/ciliates.exo.out
• test/ciliates.pep
• test/dna1.fasta
• test/dna2.fasta
• test/dna3.fasta
• test/dna4.fasta
• test/dna5.fasta
• test/dnaA.fasta
• test/dnaB.fasta
• test/dnaC.fasta
• test/dnaD.fasta
• test/dnaE.fasta
• test/dnaF.fasta
• test/dnaI.fasta
• test/dnaJ.fasta
• test/dnaK.fasta
• test/dnaL.fasta
• test/dnaM.fasta
• test/dnaN.fasta
• test/dnaO.fasta
• test/dnaQ.fasta
• test/dnaR.fasta
• test/dnaS.fasta
• test/dnaT.fasta
• test/dnaU.fasta
• test/dnaW.fasta
• test/dnaX.fasta
• test/dnaY.fasta
• test/dnaZ.fasta
• test/empty.ali
• test/exo_aligned.ali
• test/exo_aligned.fasta
• test/fragmentsseq_profile_out.fasta
• test/generic_domains.hmm.h3f
• test/generic_domains.hmm.h3i
• test/generic_domains.hmm.h3m
• test/generic_domains.hmm.h3p
• test/hmmpress.log
• test/longseq_profile_out.fasta
• test/nuclquery.fasta
• test/old-blast/prebuiltdb.phr
• test/old-blast/prebuiltdb.pin
• test/old-blast/prebuiltdb.pog
• test/old-blast/prebuiltdb.psd
• test/old-blast/prebuiltdb.psi
• test/old-blast/prebuiltdb.psq
• test/old-blast/report.blastp.xml
• test/pep.fasta
• test/pepA.fasta
• test/pepB.fasta
• test/pepC.fasta
• test/pepD.fasta
• test/pepE.fasta
• test/pepF.fasta
• test/pepI.fasta
• test/pepJ.fasta
• test/pepK.fasta
• test/pepL.fasta
• test/pepM.fasta
• test/pepN.fasta
• test/pepO.fasta
• test/pepQ.fasta
• test/pepR.fasta
• test/pepS.fasta
• test/pepT.fasta
• test/pepU.fasta
• test/pepW.fasta
• test/pepX.fasta
• test/pepY.fasta
• test/pepZ.fasta
• test/prebuiltdb.pdb
• test/prebuiltdb.phr
• test/prebuiltdb.pin
• test/prebuiltdb.pjs
• test/prebuiltdb.pog
• test/prebuiltdb.pos
• test/prebuiltdb.pot
• test/prebuiltdb.psq
• test/prebuiltdb.ptf
• test/prebuiltdb.pto
• test/protdb.fasta
• test/protquery.fasta
• test/ready_protquery.fasta
• test/ready_report.blastp.m6
• test/ready_unaligned.fasta
• test/report.blastn.m7
• test/report.blastp.m6
• test/report.blastp.xml
• test/seq_in1.fasta
• test/seq_in2.fasta
• test/seq_out1_clustal.fasta
• test/seq_out1_gap_mafft.fasta
• test/seq_out1_mafft.fasta
• test/seq_out1_short_clustal.fasta
• test/seq_out2_clustal.fasta
• test/seq_out2_mafft.fasta
• test/seq_profile_out.fasta
• test/seq_profile_out.fasta.old
• test/seq_profiles2_clustal.fasta
• test/seq_profiles_mafft.fasta
• test/seqs4cap3.fasta
• test/seqs_2profile_out_clustal.fasta
• test/seqs_profile_out_clustal.fasta
• test/taxdump/gc.prt
• test/test.faa