Files

• Build.PL
• Changes
• LICENSE
• MANIFEST
• META.json
• META.yml
• README
• dist.ini
• inotify-hookable.sh
• lib/BioX/Workflow/Command.pm
• lib/BioX/Workflow/Command/Utils/Create.pm
• lib/BioX/Workflow/Command/Utils/Files.pm
• lib/BioX/Workflow/Command/Utils/Log.pm
• lib/BioX/Workflow/Command/add.pm
• lib/BioX/Workflow/Command/new.pm
• lib/BioX/Workflow/Command/run.pm
• lib/BioX/Workflow/Command/run/Rules/Directives.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate/Mustache.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate/Text.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Sample.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Array.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/CSV.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Config.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Glob.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/HPC.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Hash.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/List.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Mustache.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Path.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Roles/File.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Types/Stash.pm
• lib/BioX/Workflow/Command/run/Rules/Directives/Walk.pm
• lib/BioX/Workflow/Command/run/Rules/Rules.pm
• lib/BioX/Workflow/Command/run/Utils/Attributes.pm
• lib/BioX/Workflow/Command/run/Utils/Debug.pm
• lib/BioX/Workflow/Command/run/Utils/Files/ResolveDeps.pm
• lib/BioX/Workflow/Command/run/Utils/Files/TrackChanges.pm
• lib/BioX/Workflow/Command/run/Utils/Samples.pm
• lib/BioX/Workflow/Command/run/Utils/WriteMeta.pm
• lib/BioX/Workflow/Command/stats.pm
• lib/BioX/Workflow/Command/validate.pm
• script/biox
• script/biox-workflow.pl
• t/author-pod-syntax.t
• t/basic.t
• t/data/chipseq-noPeaks-deeptools2-mouse10.yml
• t/data/non-model-resequencing-BWA-MEM.yml
• t/data/non-model-resequencing-anolis-BWA-MEM.yml
• t/data/non-model-resequencing-dpPilion.yml
• t/data/non-model-resequencing.yml
• t/data/resequencing-human-complete.yml
• t/data/rnaseq_ercc.yml
• t/data/rnaseq_without_DGE-DM.yml
• t/data/rnaseq_without_DGE-Human38p2.yml
• t/data/rnaseq_without_DGE-Mouse10.yml
• t/lib/TestMethod/Base.pm
• t/lib/TestsFor/BioX/Workflow/Command/Test001.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test001.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test002.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test003.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test004.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test005.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test006.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test007.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test008.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test009.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test010.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test011.pm
• t/lib/TestsFor/BioX/Workflow/Command/run/Test012.pm
• t/test_class_tests.t