Files

• Changes
• EdgeExpressDB.xcodeproj/jessica.mode1
• EdgeExpressDB.xcodeproj/jessica.pbxuser
• EdgeExpressDB.xcodeproj/project.pbxproj
• Makefile.PL
• README
• USER_INSTALL
• install.sh
• lib/Bio/Das/ProServer/SourceAdaptor/Transport/edgeexpress.pm
• lib/Bio/Das/ProServer/SourceAdaptor/edgeexpress.pm
• lib/EEDB.pm
• lib/EEDB/Assembly.pm
• lib/EEDB/Chrom.pm
• lib/EEDB/ChromChunk.pm
• lib/EEDB/Edge.pm
• lib/EEDB/EdgeSet.pm
• lib/EEDB/EdgeSource.pm
• lib/EEDB/Experiment.pm
• lib/EEDB/Expression.pm
• lib/EEDB/Feature.pm
• lib/EEDB/FeatureSet.pm
• lib/EEDB/FeatureSource.pm
• lib/EEDB/Metadata.pm
• lib/EEDB/MetadataSet.pm
• lib/EEDB/Peer.pm
• lib/EEDB/Symbol.pm
• lib/EEDB/Tools/BEDLoader.pm
• lib/EEDB/Tools/MultiLoader.pm
• lib/EEDB/Tools/OverlapCompare.pm
• lib/EEDB/Tools/PSLLoader.pm
• scripts/EXAMPLES
• scripts/eedb_chromChunkTool.pl
• scripts/eedb_create_instance.pl
• scripts/eedb_dump.pl
• scripts/eedb_getchunk.pl
• scripts/eedb_getedge.pl
• scripts/eedb_getfeature.pl
• scripts/eedb_getsource.pl
• scripts/eedb_load_OSC_tagmap_rescue.pl
• scripts/eedb_load_affychip.pl
• scripts/eedb_load_bed.pl
• scripts/eedb_load_edges.pl
• scripts/eedb_load_expression.pl
• scripts/eedb_load_expression_table.pl
• scripts/eedb_load_gff3.pl
• scripts/eedb_load_mapexpress.pl
• scripts/eedb_load_metadata.pl
• scripts/eedb_load_swissprot.pl
• scripts/eedb_mirror_source.pl
• scripts/eedb_search.pl
• scripts/eedb_sync_entrezgene.pl
• sql/assembly_chrom_data.sql
• sql/schema.sql
• sql/schema.sqlite
• testdata/hg18_refgene_2009jan15.bed.gz
• testdata/mm9_refgene_2009feb16.bed.gz
• www/edgeexpress/.htaccess
• www/edgeexpress/about/Supplementary_note_1.pdf
• www/edgeexpress/about/Supplementary_note_2.pdf
• www/edgeexpress/about/index.html
• www/edgeexpress/cgi/EXAMPLE_eedb_server.conf
• www/edgeexpress/cgi/edgeXpression.cgi
• www/edgeexpress/cgi/edgeexpress.cgi
• www/edgeexpress/cgi/edgeexpress.fcgi
• www/edgeexpress/cgi/eedb_ck_genes.cgi
• www/edgeexpress/cgi/eedb_region.cgi
• www/edgeexpress/cgi/getnetwork.cgi
• www/edgeexpress/cgi/probeExpression.cgi
• www/edgeexpress/contents/contents.js
• www/edgeexpress/contents/index.html
• www/edgeexpress/css/dbinfo.css
• www/edgeexpress/css/edgeExpress.css
• www/edgeexpress/css/edgeXpress.css
• www/edgeexpress/css/f4_style.css
• www/edgeexpress/css/f4_style.css.080314
• www/edgeexpress/css/f4_style.css.080724
• www/edgeexpress/css/footer.css
• www/edgeexpress/css/header.css
• www/edgeexpress/css/main.css
• www/edgeexpress/css/style.css
• www/edgeexpress/css/style_ie.css
• www/edgeexpress/css/subnav_bg.gif
• www/edgeexpress/css/top_menu.css
• www/edgeexpress/images/CellDesigner3.5.1.gif
• www/edgeexpress/images/Entrez_Gene.gif
• www/edgeexpress/images/HAMMER.gif
• www/edgeexpress/images/Thumbs.db
• www/edgeexpress/images/arrow.png
• www/edgeexpress/images/bullet1.gif
• www/edgeexpress/images/bullet3.gif
• www/edgeexpress/images/bullet4.gif
• www/edgeexpress/images/contact.gif
• www/edgeexpress/images/cyto-logo-smaller.gif
• www/edgeexpress/images/dimer.png
• www/edgeexpress/images/doc.gif
• www/edgeexpress/images/fantom4-logo.gif
• www/edgeexpress/images/fantom4-logo.png
• www/edgeexpress/images/fantom4-logo2.png
• www/edgeexpress/images/fantom4-logo3.png
• www/edgeexpress/images/fantom4-logo3.png.bak
• www/edgeexpress/images/fantom4-logo_orig.png
• www/edgeexpress/images/graph.gif
• www/edgeexpress/images/graph2.gif
• www/edgeexpress/images/head_logo_green2.gif
• www/edgeexpress/images/history.gif
• www/edgeexpress/images/loading.gif
• www/edgeexpress/images/miRNA.gif
• www/edgeexpress/images/nav.gif
• www/edgeexpress/images/osc_color.png
• www/edgeexpress/images/photo.gif
• www/edgeexpress/images/publication.gif
• www/edgeexpress/images/question.gif
• www/edgeexpress/images/riken-logo.png
• www/edgeexpress/images/search.gif
• www/edgeexpress/images/search2.gif
• www/edgeexpress/images/self.png
• www/edgeexpress/images/tab_base_graph2.gif
• www/edgeexpress/images/up.gif
• www/edgeexpress/index.html
• www/edgeexpress/jscript/._prototype-1.5.1.1.js
• www/edgeexpress/jscript/._prototype-1.5.1.2.js
• www/edgeexpress/jscript/._prototype-1.6.0.2.js
• www/edgeexpress/jscript/._prototype-1.6.0.3.js
• www/edgeexpress/jscript/SpryAssets/SpryAccordion.css
• www/edgeexpress/jscript/SpryAssets/SpryAccordion.js
• www/edgeexpress/jscript/SpryAssets/SpryCollapsiblePanel.css
• www/edgeexpress/jscript/SpryAssets/SpryCollapsiblePanel.js
• www/edgeexpress/jscript/SpryAssets/SpryData.js
• www/edgeexpress/jscript/SpryAssets/SpryDataExtensions.js
• www/edgeexpress/jscript/SpryAssets/SpryDebug.js
• www/edgeexpress/jscript/SpryAssets/SpryEffects.js
• www/edgeexpress/jscript/SpryAssets/SpryHTMLDataSet.js
• www/edgeexpress/jscript/SpryAssets/SpryJSONDataSet.js
• www/edgeexpress/jscript/SpryAssets/SpryMenuBar.js
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarDown.gif
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarDownHover.gif
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarHorizontal.css
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarRight.gif
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarRightHover.gif
• www/edgeexpress/jscript/SpryAssets/SpryMenuBarVertical.css
• www/edgeexpress/jscript/SpryAssets/SpryNestedJSONDataSet.js
• www/edgeexpress/jscript/SpryAssets/SpryNestedXMLDataSet.js
• www/edgeexpress/jscript/SpryAssets/SpryPagedView.js
• www/edgeexpress/jscript/SpryAssets/SpryTabbedPanels.css
• www/edgeexpress/jscript/SpryAssets/SpryTabbedPanels.js
• www/edgeexpress/jscript/SpryAssets/SpryURLUtils.js
• www/edgeexpress/jscript/SpryAssets/SpryUtils.js
• www/edgeexpress/jscript/SpryAssets/SpryValidationCheckbox.css
• www/edgeexpress/jscript/SpryAssets/SpryValidationCheckbox.js
• www/edgeexpress/jscript/SpryAssets/SpryValidationTextField.css
• www/edgeexpress/jscript/SpryAssets/SpryValidationTextField.js
• www/edgeexpress/jscript/SpryAssets/SpryXML.js
• www/edgeexpress/jscript/SpryAssets/_notes/dwsync.xml
• www/edgeexpress/jscript/SpryAssets/xpath.js
• www/edgeexpress/jscript/common.js
• www/edgeexpress/jscript/dhtmlHistory.js
• www/edgeexpress/jscript/eedb_common.js
• www/edgeexpress/jscript/eedb_search.js
• www/edgeexpress/jscript/excanvas.js
• www/edgeexpress/jscript/fantom4_info.js
• www/edgeexpress/jscript/prototype-1.5.1.1.js
• www/edgeexpress/jscript/prototype-1.5.1.2.js
• www/edgeexpress/jscript/prototype-1.6.0.2.js
• www/edgeexpress/jscript/prototype-1.6.0.3.js
• www/edgeexpress/subnet/index.html
• www/edgeexpress/subnet/subnet.js
• www/edgeexpress/view/blank.html
• www/edgeexpress/view/chipOverflow.html
• www/edgeexpress/view/edgeExpress.js
• www/edgeexpress/view/geneOverflow.html
• www/edgeexpress/view/graphLoading.html
• www/edgeexpress/view/index.html
• www/edgeexpress/view/tfbsOverflow.html
• www/edgeexpress/view/tooltip.js