Bio-Grid-Run-SGE 0.0383
Files
- Build.PL
- LICENSE
- MANIFEST.bak
- META.yml
- README
- bin/bgrs-notify.pl
- bin/cat.pl
- bin/cat_by_regex.pl
- bin/cl_muscle_example.pl
- bin/distribution
- bin/dummy_worker.pl
- bin/jclone
- bin/log2debug.pl
- bin/mail.pl
- bin/mail.sh
- bin/qfake.pl
- bin/qstat-jwb
- bin/qtime
- bin/qtime-dist
- bin/rmrex
- bin/rocksblast
- bin/test_sendmail.pl
- build.sh
- config_examples/_comp_bio_cluster.config
- config_examples/blast_all-vs-all.conf
- dist.ini
- lib/Bio/Grid/Run/SGE.pm
- lib/Bio/Grid/Run/SGE/ClusterScript.pod
- lib/Bio/Grid/Run/SGE/Config.pm
- lib/Bio/Grid/Run/SGE/Index.pm
- lib/Bio/Grid/Run/SGE/Index/Dummy.pm
- lib/Bio/Grid/Run/SGE/Index/FileList.pm
- lib/Bio/Grid/Run/SGE/Index/General.pm
- lib/Bio/Grid/Run/SGE/Index/List.pm
- lib/Bio/Grid/Run/SGE/Index/ListFromFile.pm
- lib/Bio/Grid/Run/SGE/Index/Range.pm
- lib/Bio/Grid/Run/SGE/Iterator.pm
- lib/Bio/Grid/Run/SGE/Iterator/AllvsAll.pm
- lib/Bio/Grid/Run/SGE/Iterator/AllvsAllNoRep.pm
- lib/Bio/Grid/Run/SGE/Iterator/AvsB.pm
- lib/Bio/Grid/Run/SGE/Iterator/Consecutive.pm
- lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
- lib/Bio/Grid/Run/SGE/Iterator/List.pm
- lib/Bio/Grid/Run/SGE/Iterator/None.pm
- lib/Bio/Grid/Run/SGE/Log/Analysis.pm
- lib/Bio/Grid/Run/SGE/Log/Notify.pod
- lib/Bio/Grid/Run/SGE/Log/Notify/Jabber.pm
- lib/Bio/Grid/Run/SGE/Log/Notify/Mail.pm
- lib/Bio/Grid/Run/SGE/Log/Worker.pm
- lib/Bio/Grid/Run/SGE/Master.pm
- lib/Bio/Grid/Run/SGE/Role/Indexable.pm
- lib/Bio/Grid/Run/SGE/Role/Iterable.pm
- lib/Bio/Grid/Run/SGE/Util.pm
- lib/Bio/Grid/Run/SGE/Util/Blast.pm
- lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
- lib/Bio/Grid/Run/SGE/Worker.pm
- lib/FindBinNew.pm
- misc/Makefile
- misc/Mtest.pm
- misc/bio-sge-combine-allvsall-norep.pl
- misc/idx/testenv.0.idx
- misc/test.pl
- misc/testenv.conf.yml
- misc/testenv.result/finished
- misc/testenv.result/testenv.j325580.1.t0.json
- misc/testenv.result/testenv.j325580.2.t1.json
- misc/testenv.result/testenv.j325580.3.t2.json
- misc/testenv.result/testenv.j325580.config
- misc/testenv.result/testenv.j326711.config
- misc/testenv.result/testenv.j326713.config
- misc/testenv.result/testenv.j326756.1.t0.json
- misc/testenv.result/testenv.j326756.2.t1.json
- misc/testenv.result/testenv.j326756.3.t2.json
- misc/testenv.result/testenv.j326756.config
- misc/testenv.result/testenv.j326771.1.t0.json
- misc/testenv.result/testenv.j326771.2.t1.json
- misc/testenv.result/testenv.j326771.3.t2.json
- misc/testenv.result/testenv.j326771.config
- misc/testenv.result/testenv.j330358.1.t0.env.json
- misc/testenv.result/testenv.j330358.1.t0.item.json
- misc/testenv.result/testenv.j330358.2.t1.env.json
- misc/testenv.result/testenv.j330358.2.t1.item.json
- misc/testenv.result/testenv.j330358.3.t2.env.json
- misc/testenv.result/testenv.j330358.3.t2.item.json
- misc/testenv.result/testenv.j330358.config
- misc/testenv.tmp/env.testenv.pl
- misc/testenv.tmp/err/p325580_testenv.e325581
- misc/testenv.tmp/err/p326756_testenv.e326757
- misc/testenv.tmp/err/p326771_testenv.e326772
- misc/testenv.tmp/err/p330358_testenv.e330359
- misc/testenv.tmp/err/testenv.e325580.1
- misc/testenv.tmp/err/testenv.e325580.2
- misc/testenv.tmp/err/testenv.e325580.3
- misc/testenv.tmp/err/testenv.e326756.1
- misc/testenv.tmp/err/testenv.e326756.2
- misc/testenv.tmp/err/testenv.e326756.3
- misc/testenv.tmp/err/testenv.e326771.1
- misc/testenv.tmp/err/testenv.e326771.2
- misc/testenv.tmp/err/testenv.e326771.3
- misc/testenv.tmp/err/testenv.e330358.1
- misc/testenv.tmp/err/testenv.e330358.2
- misc/testenv.tmp/err/testenv.e330358.3
- misc/testenv.tmp/log.testenv.j330358.txt
- misc/testenv.tmp/log/main.testenv.j325580.cmd
- misc/testenv.tmp/log/main.testenv.j326711.cmd
- misc/testenv.tmp/log/main.testenv.j326713.cmd
- misc/testenv.tmp/log/main.testenv.j326756.cmd
- misc/testenv.tmp/log/main.testenv.j326771.cmd
- misc/testenv.tmp/log/main.testenv.j330358.cmd
- misc/testenv.tmp/log/testenv.l325580.1
- misc/testenv.tmp/log/testenv.l325580.2
- misc/testenv.tmp/log/testenv.l325580.3
- misc/testenv.tmp/log/testenv.l326756.1
- misc/testenv.tmp/log/testenv.l326756.2
- misc/testenv.tmp/log/testenv.l326756.3
- misc/testenv.tmp/log/testenv.l326771.1
- misc/testenv.tmp/log/testenv.l326771.2
- misc/testenv.tmp/log/testenv.l326771.3
- misc/testenv.tmp/log/testenv.l330358.1
- misc/testenv.tmp/log/testenv.l330358.2
- misc/testenv.tmp/log/testenv.l330358.3
- misc/testenv.tmp/out/p325580_testenv.o325581
- misc/testenv.tmp/out/p326756_testenv.o326757
- misc/testenv.tmp/out/p326771_testenv.o326772
- misc/testenv.tmp/out/p330358_testenv.o330359
- misc/testenv.tmp/out/testenv.o325580.1
- misc/testenv.tmp/out/testenv.o325580.2
- misc/testenv.tmp/out/testenv.o325580.3
- misc/testenv.tmp/out/testenv.o326756.1
- misc/testenv.tmp/out/testenv.o326756.2
- misc/testenv.tmp/out/testenv.o326756.3
- misc/testenv.tmp/out/testenv.o326771.1
- misc/testenv.tmp/out/testenv.o326771.2
- misc/testenv.tmp/out/testenv.o326771.3
- misc/testenv.tmp/out/testenv.o330358.1
- misc/testenv.tmp/out/testenv.o330358.2
- misc/testenv.tmp/out/testenv.o330358.3
- misc/testenv.tmp/post.testenv.j325580.cmd
- misc/testenv.tmp/post.testenv.j326711.cmd
- misc/testenv.tmp/post.testenv.j326713.cmd
- misc/testenv.tmp/post.testenv.j326756.cmd
- misc/testenv.tmp/post.testenv.j326771.cmd
- misc/testenv.tmp/post.testenv.j330358.cmd
- misc/testenv.tmp/restart.testenv.j325580.sh
- misc/testenv.tmp/restart.testenv.j326756.sh
- misc/testenv.tmp/restart.testenv.j326771.sh
- misc/testenv.tmp/restart.testenv.j330358.sh
- misc/testenv.tmp/testenv.config.dat
- misc/testenv.tmp/testenv.j325580.log
- misc/testenv.tmp/testenv.j326756.log
- misc/testenv.tmp/testenv.j326771.log
- misc/testenv.tmp/update.testenv.j325580.sh
- misc/testenv.tmp/update.testenv.j326756.sh
- misc/testenv.tmp/update.testenv.j326771.sh
- misc/testenv.tmp/update.testenv.j330358.sh
- perf/test.pl
- scripts/cl_blast-existing-db.pl
- scripts/cl_blast_all-vs-all
- scripts/cl_dummy.pl
- scripts/cl_env.pl
- scripts/cl_exonerate.pl
- scripts/cl_fail_on_purpose.pl
- scripts/cl_gmap.pl
- scripts/cl_gzip.pl
- scripts/cl_iprscan.pl
- scripts/cl_muscle.pl
- scripts/cl_phylip-protdist.pl
- scripts/cl_phyml.pl
- scripts/cl_psipred.pl
- scripts/cl_run_single.pl
- scripts/env.qsub.sh
- scripts/record_qsub_env.pl
- t/00-basic_qfake.t
- t/00-basic_qfake_err.t
- t/00-load.t
- t/Bio-Grid-Run-SGE-Config.t
- t/Bio-Grid-Run-SGE-Index-Dummy.t
- t/Bio-Grid-Run-SGE-Index-FileList.t
- t/Bio-Grid-Run-SGE-Index-General.t
- t/Bio-Grid-Run-SGE-Index-List.t
- t/Bio-Grid-Run-SGE-Index-ListFromFile.t
- t/Bio-Grid-Run-SGE-Index-Range.t
- t/Bio-Grid-Run-SGE-Index.t
- t/Bio-Grid-Run-SGE-Iterator-AllvsAllNoRep.t
- t/Bio-Grid-Run-SGE-Iterator-AvsB.t
- t/Bio-Grid-Run-SGE-Iterator-Consecutive.t
- t/Bio-Grid-Run-SGE-Log-Analysis.t
- t/Bio-Grid-Run-SGE-Master.qsub.pl
- t/Bio-Grid-Run-SGE-Master.script.perf.pl
- t/Bio-Grid-Run-SGE-Master.script.pl
- t/Bio-Grid-Run-SGE-Master.t
- t/Bio-Grid-Run-SGE-Role-Iterable.t
- t/Bio-Grid-Run-SGE-Util-Blast.t
- t/Bio-Grid-Run-SGE-Util.t
- t/Bio-Grid-Run-SGE-Worker.t
- t/Bio-Grid-Run-SGE.t
- t/boilerplate.t
- t/data/Bio-Grid-Run-SGE-Consecutive.range-1-5-3.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-1-2.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-44-44-0.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-44-44-1.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.nosep.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.nosep.skipfirst.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.ref.fa
- t/data/Bio-Grid-Run-SGE-Index-General.range-chunky-0-2.ref.fa
- t/data/Bio-Grid-Run-SGE-Master_run.yml
- t/data/test.fa
- t/manifest.t
- t/pod-coverage.t
- t/pod.t
- t/testrun/Makefile
- t/testrun/cl_dummy.pl
- t/testrun/cl_dummy_fail.pl
- t/testrun/conf.pl
- t/testrun/test.fa
- t/zz-00-basic_qsub_live.t
- templateconf.yml
- tmp/testjob.l234.1
- tmp_test/0d9izggm1b/conf.yml
- tmp_test/0d9izggm1b/idx/test_env.0.idx
- tmp_test/0d9izggm1b/r/test_env.j1385745003.1.t0.json
- tmp_test/0d9izggm1b/r/test_env.j1385745003.3.t2.json
- tmp_test/0d9izggm1b/r/test_env.j1385745003.4.t3.json
- tmp_test/0d9izggm1b/r/test_env.j1385745003.5.t4.json
- tmp_test/0d9izggm1b/r/test_env.j1385745003.6.t5.json
- tmp_test/0d9izggm1b/r/test_env.j1385745003.config
- tmp_test/0d9izggm1b/tmp/env.test_env.pl
- tmp_test/0d9izggm1b/tmp/log/main.test_env.j1385745003.cmd
- tmp_test/0d9izggm1b/tmp/log/test_env.l1385745003.1
- tmp_test/0d9izggm1b/tmp/log/test_env.l1385745003.3
- tmp_test/0d9izggm1b/tmp/log/test_env.l1385745003.4
- tmp_test/0d9izggm1b/tmp/log/test_env.l1385745003.5
- tmp_test/0d9izggm1b/tmp/log/test_env.l1385745003.6
- tmp_test/0d9izggm1b/tmp/post.test_env.j1385745003.cmd
- tmp_test/0d9izggm1b/tmp/restart.test_env.j1385745003.sh
- tmp_test/0d9izggm1b/tmp/test_env.config.dat
- tmp_test/0d9izggm1b/tmp/test_env.j1385745003.log
- tmp_test/0d9izggm1b/tmp/update.test_env.j1385745003.sh
- tmp_test/15GAoBMqTK/conf.yml
- tmp_test/4K3PBUQfeH/conf.yml
- tmp_test/4K3PBUQfeH/idx/test_env.0.idx
- tmp_test/4K3PBUQfeH/r/test_env.j327159.2.t1.env.json
- tmp_test/4K3PBUQfeH/r/test_env.j327159.2.t1.item.json
- tmp_test/4K3PBUQfeH/r/test_env.j327159.6.t5.env.json
- tmp_test/4K3PBUQfeH/r/test_env.j327159.config
- tmp_test/4K3PBUQfeH/tmp/env.test_env.pl
- tmp_test/4K3PBUQfeH/tmp/err/test_env.e327159.1
- tmp_test/4K3PBUQfeH/tmp/err/test_env.e327159.2
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- tmp_test/4K3PBUQfeH/tmp/err/test_env.e327159.6
- tmp_test/4K3PBUQfeH/tmp/log/main.test_env.j327159.cmd
- tmp_test/4K3PBUQfeH/tmp/log/test_env.l327159.2
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- tmp_test/4K3PBUQfeH/tmp/log/test_env.l327159.6
- tmp_test/4K3PBUQfeH/tmp/out/test_env.o327159.1
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- tmp_test/4K3PBUQfeH/tmp/out/test_env.o327159.6
- tmp_test/4K3PBUQfeH/tmp/post.test_env.j327159.cmd
- tmp_test/4K3PBUQfeH/tmp/test_env.config.dat
- tmp_test/EH0usYT80o/conf.yml
- tmp_test/ZOFVOyIO5X/conf.yml
- tmp_test/_JtPWEURHJ/conf.yml
- tmp_test/adamSAwJmA/conf.yml
- tmp_test/env.json
- tmp_test/iMNvrPOlIN/conf.yml
- tmp_test/n4XtYzBP7m/conf.yml