Files

• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README.md
• bin/clipseqtools
• bin/clipseqtools-compare
• bin/clipseqtools-plot
• bin/clipseqtools-preprocess
• dist.ini
• lib/CLIPSeqTools.pm
• lib/CLIPSeqTools/App.pm
• lib/CLIPSeqTools/App/all.pm
• lib/CLIPSeqTools/App/cluster_size_and_score_distribution.pm
• lib/CLIPSeqTools/App/conservation_distribution.pm
• lib/CLIPSeqTools/App/count_reads_on_genic_elements.pm
• lib/CLIPSeqTools/App/distribution_on_genic_elements.pm
• lib/CLIPSeqTools/App/distribution_on_introns_exons.pm
• lib/CLIPSeqTools/App/export_bed.pm
• lib/CLIPSeqTools/App/genome_coverage.pm
• lib/CLIPSeqTools/App/genomic_distribution.pm
• lib/CLIPSeqTools/App/nmer_enrichment_over_shuffled.pm
• lib/CLIPSeqTools/App/nucleotide_composition.pm
• lib/CLIPSeqTools/App/reads_long_gaps_size_distribution.pm
• lib/CLIPSeqTools/App/size_distribution.pm
• lib/CLIPSeqTools/CompareApp.pm
• lib/CLIPSeqTools/CompareApp/all.pm
• lib/CLIPSeqTools/CompareApp/compare_counts.pm
• lib/CLIPSeqTools/CompareApp/join_tables.pm
• lib/CLIPSeqTools/CompareApp/libraries_overlap_stats.pm
• lib/CLIPSeqTools/CompareApp/libraries_relative_read_density.pm
• lib/CLIPSeqTools/PlotApp.pm
• lib/CLIPSeqTools/PlotApp/cluster_size_and_score_distribution.pm
• lib/CLIPSeqTools/PlotApp/conservation_distribution.pm
• lib/CLIPSeqTools/PlotApp/distribution_on_genic_elements.pm
• lib/CLIPSeqTools/PlotApp/distribution_on_introns_exons.pm
• lib/CLIPSeqTools/PlotApp/genomic_distribution.pm
• lib/CLIPSeqTools/PlotApp/libraries_relative_read_density.pm
• lib/CLIPSeqTools/PlotApp/nucleotide_composition.pm
• lib/CLIPSeqTools/PlotApp/reads_long_gaps_size_distribution.pm
• lib/CLIPSeqTools/PlotApp/scatterplot.pm
• lib/CLIPSeqTools/PlotApp/size_distribution.pm
• lib/CLIPSeqTools/PreprocessApp.pm
• lib/CLIPSeqTools/PreprocessApp/all.pm
• lib/CLIPSeqTools/PreprocessApp/annotate_with_conservation.pm
• lib/CLIPSeqTools/PreprocessApp/annotate_with_deletions.pm
• lib/CLIPSeqTools/PreprocessApp/annotate_with_file.pm
• lib/CLIPSeqTools/PreprocessApp/annotate_with_genic_elements.pm
• lib/CLIPSeqTools/PreprocessApp/cleanup_alignment.pm
• lib/CLIPSeqTools/PreprocessApp/collapse_fastq.pm
• lib/CLIPSeqTools/PreprocessApp/cut_adaptor.pm
• lib/CLIPSeqTools/PreprocessApp/sam_to_sqlite.pm
• lib/CLIPSeqTools/PreprocessApp/star_alignment.pm
• lib/CLIPSeqTools/PreprocessApp/trim_fastq.pm
• lib/CLIPSeqTools/Role/Option/Genes.pm
• lib/CLIPSeqTools/Role/Option/Library.pm
• lib/CLIPSeqTools/Role/Option/OutputPrefix.pm
• lib/CLIPSeqTools/Role/Option/Plot.pm
• lib/CLIPSeqTools/Role/Option/ReferenceLibrary.pm
• lib/CLIPSeqTools/Role/Option/Transcripts.pm
• lib/CLIPSeqTools/Tutorial/Details.pod
• lib/CLIPSeqTools/Tutorial/Introduction.pod
• t/data/alignments1.db
• t/data/alignments2.db
• t/data/transcripts.gtf