Files

• CONTRIBUTING.md
• Changes
• Dockerfile
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README
• README.md
• bin/fqc
• bin/fqlen.pl
• data/alpha.fa
• data/alpha.fq
• data/bad.fastq
• data/beta.fa
• data/beta.fq
• data/comments.fasta
• data/comments.fastq
• data/compressed.fasta.gz
• data/compressed.fastq.gz
• data/dataset.fastq.gz
• data/encodings/test-cr.fa.fa
• data/encodings/test-crlf.fa
• data/encodings/test-lf.fa
• data/file1.fa
• data/file1.fq
• data/file2.fa
• data/file2.fq
• data/illumina_1.fq.gz
• data/illumina_2.fq.gz
• data/illumina_nocomm.fq
• data/interleaved.fq.gz
• data/more_comments.fa
• data/old_sanger.fastq
• data/seq.fa
• data/seq.fq
• data/space_comments.fa
• data/test.fasta
• data/test.fastq
• data/test2.fastq
• dist.ini
• docker.sh
• lib/FASTX/Reader.pm
• lib/FASTX/ReaderPaired.pm
• lib/FASTX/ScriptHelper.pm
• lib/FASTX/Seq.pm
• scripts/Benchmark.pl
• scripts/CountTwo.pl
• scripts/Counter.pl
• scripts/FastqReader.pl
• scripts/Loader.pl
• scripts/Nested.pl
• scripts/NestedInt.pl
• scripts/PE.pl
• scripts/README.md
• scripts/Reader.pl
• scripts/Seq.pl
• scripts/Seqclass.pl
• scripts/Stdin.pl
• scripts/Utils.pl
• setup.sh
• t/01_basic_test.t
• t/02_parse_crlf.t
• t/02_parse_fasta.t
• t/02_preload.t
• t/02_preload_obj.t
• t/03_parse_fastq.t
• t/04_stdin_1.t
• t/04_stdin_2.t
• t/05_fasta_comments.t
• t/06_fastq_comments.t
• t/07_fastq_parser_1.t
• t/07_fastq_parser_2.t
• t/08_gzipped_fastq.t
• t/08_gzipped_fastq_alternative.t
• t/09_error_nofile.t
• t/10_error_fastq.t
• t/11_get_format.t
• t/12_gzipped_fasta.t
• t/13_illumina_read.t
• t/14_illumina_nonillumina.t
• t/15_parse_pe.t
• t/16_parse_interleaved.t
• t/17_parse_pe_autopair.t
• t/18_parse_pe_bad_names.t
• t/19_parse_pe_rev.t
• t/20_parse_pe_bad_interleaved.t
• t/30_helper.t
• t/31_helper_fun.t
• t/40_two_fastas.t
• t/40_two_files.t
• t/51_seq_basic_1.t
• t/51_seq_basic_new.t
• t/52_methods_seq.t
• t/53_Seq_asfastx.t
• t/53_with_fastxseq.t
• t/54_Seq_asfastx_bad.t
• t/54_Seq_isfastx.t
• t/54_copy.t
• t/54_invalid_seq.t
• t/55_Seq_slice.t
• t/55_next.t
• t/55_nextobj.t
• t/56_Seq_flags.t
• t/57_Seq_Trans.t
• t/61_seq_qual.t
• t/62_seq_qualities.t
• t/docker.sh
• t/release-00-pod.t
• t/release-01-pod-coverage.t
• t/release-03-minimum-standards.t
• t/release-05-changes.t
• t/release-check-version.t
• xt/author/bench.pl
• xt/release/02-perl-min.pl
• xt/release/after.sh
• xt/release/before.sh
• xt/whiler.pl