Files

• CONTRIBUTING.md
• Changes
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• PIPELINE.md
• README
• README.md
• arxiv/arxiv/texput.log
• arxiv/paper.bib
• arxiv/paper_arxiv.aux
• arxiv/paper_arxiv.bbl
• arxiv/paper_arxiv.blg
• arxiv/paper_arxiv.log
• arxiv/paper_arxiv.pdf
• arxiv/paper_arxiv.tex
• arxiv/viewjobs.png
• bin/configuration
• bin/lsjobs
• bin/make_image_from_bioconda
• bin/make_package
• bin/nbilaunch
• bin/printpath
• bin/printslurm
• bin/rm_package
• bin/runjob
• bin/session
• bin/shelf
• bin/slurm-load
• bin/viewjobs
• bin/waitjobs
• bin/whilejob
• bin/whojobs
• dist.ini
• docs/Gemfile
• docs/_config.yml
• docs/_layouts/default.html
• docs/configuration.md
• docs/index.md
• docs/lsjobs.png
• docs/nbi-slurm.svg
• docs/one-mouse.svg
• docs/runjob.png
• docs/shelf.png
• docs/tutorial.md
• docs/viewjobs.png
• docs/whojobs.png
• lib/NBI/EcoScheduler.pm
• lib/NBI/Job.pm
• lib/NBI/Launcher.pm
• lib/NBI/Launcher/Kraken2.pm
• lib/NBI/Launcher/RemovePrimers.pm
• lib/NBI/Manifest.pm
• lib/NBI/Opts.pm
• lib/NBI/Pipeline.pm
• lib/NBI/Queue.pm
• lib/NBI/QueuedJob.pm
• lib/NBI/Slurm.pm
• lib/NBI/Test.pl
• run.sh
• s/clean.sh
• s/install.sh
• s/job.pl
• s/opts.pl
• s/queue.pl
• s/run.pl
• t/01-base.t
• t/01-unit.t
• t/02-opts.t
• t/03-job.t
• t/04-queuedjob.t
• t/05-bin-ver.t
• t/06-eco.t
• t/10-hpc.t
• t/11-bins.t
• t/12-array.t
• t/13-params-array.t
• t/14-array-limit.t
• t/15-slurm-load.t
• t/20-intensive.t
• t/29-bins-pod.t
• t/30-misc.t
• t/31-session.t
• t/50-manifest.t
• t/51-launcher-base.t
• t/52-launcher-kraken2.t
• t/53-pipeline.t
• t/lib/NBI/Test/MockCommand.pm
• t/release-00-pod.t
• t/release-01-pod-coverage.t
• t/release-03-minimum-standards.t
• t/release-05-changes.t
• t/release-check-version.t
• xt/hpc-01-cluster.t
• xt/hpc-02-submit.t
• xt/hpc-03-wait.t
• xt/hpc-04-bins.t
• xt/release/02-perl-min.pl