bioperl 1.5.2_004-RCb
- Released by
- SENDU
- Version
- Release Date
- 2006-11-18
- Kwalitee
- 134.38
- Core Kwalitee
- 87.5
- LINKS
bioperl 1.5.2_004-RCb Deleted
Files
- AUTHORS
- BUGS
- Bio/Align/AlignI.pm
- Bio/Align/DNAStatistics.pm
- Bio/Align/PairwiseStatistics.pm
- Bio/Align/ProteinStatistics.pm
- Bio/Align/StatisticsI.pm
- Bio/Align/Utilities.pm
- Bio/AlignIO.pm
- Bio/AlignIO/bl2seq.pm
- Bio/AlignIO/clustalw.pm
- Bio/AlignIO/emboss.pm
- Bio/AlignIO/fasta.pm
- Bio/AlignIO/largemultifasta.pm
- Bio/AlignIO/maf.pm
- Bio/AlignIO/mase.pm
- Bio/AlignIO/mega.pm
- Bio/AlignIO/meme.pm
- Bio/AlignIO/metafasta.pm
- Bio/AlignIO/msf.pm
- Bio/AlignIO/nexus.pm
- Bio/AlignIO/pfam.pm
- Bio/AlignIO/phylip.pm
- Bio/AlignIO/po.pm
- Bio/AlignIO/prodom.pm
- Bio/AlignIO/psi.pm
- Bio/AlignIO/selex.pm
- Bio/AlignIO/stockholm.pm
- Bio/AnalysisI.pm
- Bio/AnalysisParserI.pm
- Bio/AnalysisResultI.pm
- Bio/AnnotatableI.pm
- Bio/Annotation/AnnotationFactory.pm
- Bio/Annotation/Collection.pm
- Bio/Annotation/Comment.pm
- Bio/Annotation/DBLink.pm
- Bio/Annotation/OntologyTerm.pm
- Bio/Annotation/Reference.pm
- Bio/Annotation/SimpleValue.pm
- Bio/Annotation/StructuredValue.pm
- Bio/Annotation/Target.pm
- Bio/Annotation/TypeManager.pm
- Bio/AnnotationCollectionI.pm
- Bio/AnnotationI.pm
- Bio/Assembly/Contig.pm
- Bio/Assembly/ContigAnalysis.pm
- Bio/Assembly/IO.pm
- Bio/Assembly/IO/ace.pm
- Bio/Assembly/IO/phrap.pm
- Bio/Assembly/Scaffold.pm
- Bio/Assembly/ScaffoldI.pm
- Bio/Assembly/Singlet.pm
- Bio/Biblio.pm
- Bio/Biblio/Article.pm
- Bio/Biblio/BiblioBase.pm
- Bio/Biblio/Book.pm
- Bio/Biblio/BookArticle.pm
- Bio/Biblio/IO.pm
- Bio/Biblio/IO/medline2ref.pm
- Bio/Biblio/IO/medlinexml.pm
- Bio/Biblio/IO/pubmed2ref.pm
- Bio/Biblio/IO/pubmedxml.pm
- Bio/Biblio/Journal.pm
- Bio/Biblio/JournalArticle.pm
- Bio/Biblio/MedlineArticle.pm
- Bio/Biblio/MedlineBook.pm
- Bio/Biblio/MedlineBookArticle.pm
- Bio/Biblio/MedlineJournal.pm
- Bio/Biblio/MedlineJournalArticle.pm
- Bio/Biblio/Organisation.pm
- Bio/Biblio/Patent.pm
- Bio/Biblio/Person.pm
- Bio/Biblio/Proceeding.pm
- Bio/Biblio/Provider.pm
- Bio/Biblio/PubmedArticle.pm
- Bio/Biblio/PubmedBookArticle.pm
- Bio/Biblio/PubmedJournalArticle.pm
- Bio/Biblio/Ref.pm
- Bio/Biblio/Service.pm
- Bio/Biblio/TechReport.pm
- Bio/Biblio/Thesis.pm
- Bio/Biblio/WebResource.pm
- Bio/Cluster/ClusterFactory.pm
- Bio/Cluster/FamilyI.pm
- Bio/Cluster/SequenceFamily.pm
- Bio/Cluster/UniGene.pm
- Bio/Cluster/UniGeneI.pm
- Bio/ClusterI.pm
- Bio/ClusterIO.pm
- Bio/ClusterIO/dbsnp.pm
- Bio/ClusterIO/unigene.pm
- Bio/CodonUsage/IO.pm
- Bio/CodonUsage/Table.pm
- Bio/Coordinate/Chain.pm
- Bio/Coordinate/Collection.pm
- Bio/Coordinate/ExtrapolatingPair.pm
- Bio/Coordinate/GeneMapper.pm
- Bio/Coordinate/Graph.pm
- Bio/Coordinate/MapperI.pm
- Bio/Coordinate/Pair.pm
- Bio/Coordinate/Result.pm
- Bio/Coordinate/Result/Gap.pm
- Bio/Coordinate/Result/Match.pm
- Bio/Coordinate/ResultI.pm
- Bio/Coordinate/Utils.pm
- Bio/DB/Ace.pm
- Bio/DB/Biblio/biofetch.pm
- Bio/DB/Biblio/eutils.pm
- Bio/DB/Biblio/pdf.pm
- Bio/DB/Biblio/soap.pm
- Bio/DB/BiblioI.pm
- Bio/DB/BioFetch.pm
- Bio/DB/CUTG.pm
- Bio/DB/DBFetch.pm
- Bio/DB/EMBL.pm
- Bio/DB/EUtilities.pm
- Bio/DB/EUtilities/Cookie.pm
- Bio/DB/EUtilities/ElinkData.pm
- Bio/DB/EUtilities/efetch.pm
- Bio/DB/EUtilities/egquery.pm
- Bio/DB/EUtilities/einfo.pm
- Bio/DB/EUtilities/elink.pm
- Bio/DB/EUtilities/epost.pm
- Bio/DB/EUtilities/esearch.pm
- Bio/DB/EUtilities/esummary.pm
- Bio/DB/EntrezGene.pm
- Bio/DB/Expression.pm
- Bio/DB/Expression/geo.pm
- Bio/DB/Failover.pm
- Bio/DB/Fasta.pm
- Bio/DB/FileCache.pm
- Bio/DB/Flat.pm
- Bio/DB/Flat/BDB.pm
- Bio/DB/Flat/BDB/embl.pm
- Bio/DB/Flat/BDB/fasta.pm
- Bio/DB/Flat/BDB/genbank.pm
- Bio/DB/Flat/BDB/swiss.pm
- Bio/DB/Flat/BDB/swissprot.pm
- Bio/DB/Flat/BinarySearch.pm
- Bio/DB/GDB.pm
- Bio/DB/GFF.pm
- Bio/DB/GFF/Adaptor/ace.pm
- Bio/DB/GFF/Adaptor/berkeleydb.pm
- Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
- Bio/DB/GFF/Adaptor/biofetch.pm
- Bio/DB/GFF/Adaptor/biofetch_oracle.pm
- Bio/DB/GFF/Adaptor/dbi.pm
- Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
- Bio/DB/GFF/Adaptor/dbi/iterator.pm
- Bio/DB/GFF/Adaptor/dbi/mysql.pm
- Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
- Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
- Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
- Bio/DB/GFF/Adaptor/dbi/oracle.pm
- Bio/DB/GFF/Adaptor/dbi/oracleace.pm
- Bio/DB/GFF/Adaptor/dbi/pg.pm
- Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
- Bio/DB/GFF/Adaptor/memory.pm
- Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
- Bio/DB/GFF/Adaptor/memory/iterator.pm
- Bio/DB/GFF/Aggregator.pm
- Bio/DB/GFF/Aggregator/alignment.pm
- Bio/DB/GFF/Aggregator/clone.pm
- Bio/DB/GFF/Aggregator/coding.pm
- Bio/DB/GFF/Aggregator/match.pm
- Bio/DB/GFF/Aggregator/none.pm
- Bio/DB/GFF/Aggregator/processed_transcript.pm
- Bio/DB/GFF/Aggregator/so_transcript.pm
- Bio/DB/GFF/Aggregator/transcript.pm
- Bio/DB/GFF/Aggregator/ucsc_acembly.pm
- Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
- Bio/DB/GFF/Aggregator/ucsc_genscan.pm
- Bio/DB/GFF/Aggregator/ucsc_refgene.pm
- Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
- Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
- Bio/DB/GFF/Aggregator/ucsc_softberry.pm
- Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
- Bio/DB/GFF/Aggregator/ucsc_unigene.pm
- Bio/DB/GFF/Featname.pm
- Bio/DB/GFF/Feature.pm
- Bio/DB/GFF/Homol.pm
- Bio/DB/GFF/RelSegment.pm
- Bio/DB/GFF/Segment.pm
- Bio/DB/GFF/Typename.pm
- Bio/DB/GFF/Util/Binning.pm
- Bio/DB/GFF/Util/Rearrange.pm
- Bio/DB/GenBank.pm
- Bio/DB/GenPept.pm
- Bio/DB/GenericWebDBI.pm
- Bio/DB/InMemoryCache.pm
- Bio/DB/LocationI.pm
- Bio/DB/MeSH.pm
- Bio/DB/NCBIHelper.pm
- Bio/DB/Query/GenBank.pm
- Bio/DB/Query/WebQuery.pm
- Bio/DB/QueryI.pm
- Bio/DB/RandomAccessI.pm
- Bio/DB/RefSeq.pm
- Bio/DB/ReferenceI.pm
- Bio/DB/Registry.pm
- Bio/DB/SeqFeature.pm
- Bio/DB/SeqFeature/NormalizedFeature.pm
- Bio/DB/SeqFeature/NormalizedFeatureI.pm
- Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
- Bio/DB/SeqFeature/Segment.pm
- Bio/DB/SeqFeature/Store.pm
- Bio/DB/SeqFeature/Store/DBI/Iterator.pm
- Bio/DB/SeqFeature/Store/DBI/mysql.pm
- Bio/DB/SeqFeature/Store/GFF3Loader.pm
- Bio/DB/SeqFeature/Store/bdb.pm
- Bio/DB/SeqFeature/Store/berkeleydb.pm
- Bio/DB/SeqFeature/Store/memory.pm
- Bio/DB/SeqHound.pm
- Bio/DB/SeqI.pm
- Bio/DB/SeqVersion.pm
- Bio/DB/SeqVersion/gi.pm
- Bio/DB/SwissProt.pm
- Bio/DB/Taxonomy.pm
- Bio/DB/Taxonomy/entrez.pm
- Bio/DB/Taxonomy/flatfile.pm
- Bio/DB/Taxonomy/list.pm
- Bio/DB/Universal.pm
- Bio/DB/UpdateableSeqI.pm
- Bio/DB/WebDBSeqI.pm
- Bio/DB/XEMBL.pm
- Bio/DB/XEMBLService.pm
- Bio/DBLinkContainerI.pm
- Bio/Das/FeatureTypeI.pm
- Bio/Das/SegmentI.pm
- Bio/DasI.pm
- Bio/DescribableI.pm
- Bio/Event/EventGeneratorI.pm
- Bio/Event/EventHandlerI.pm
- Bio/Expression/Contact.pm
- Bio/Expression/DataSet.pm
- Bio/Expression/FeatureGroup.pm
- Bio/Expression/FeatureGroup/FeatureGroupMas50.pm
- Bio/Expression/FeatureI.pm
- Bio/Expression/FeatureSet/FeatureSetMas50.pm
- Bio/Expression/Platform.pm
- Bio/Expression/ProbeI.pm
- Bio/Expression/Sample.pm
- Bio/Factory/AnalysisI.pm
- Bio/Factory/ApplicationFactoryI.pm
- Bio/Factory/DriverFactory.pm
- Bio/Factory/FTLocationFactory.pm
- Bio/Factory/HitFactoryI.pm
- Bio/Factory/LocationFactoryI.pm
- Bio/Factory/MapFactoryI.pm
- Bio/Factory/ObjectBuilderI.pm
- Bio/Factory/ObjectFactory.pm
- Bio/Factory/ObjectFactoryI.pm
- Bio/Factory/ResultFactoryI.pm
- Bio/Factory/SeqAnalysisParserFactory.pm
- Bio/Factory/SeqAnalysisParserFactoryI.pm
- Bio/Factory/SequenceFactoryI.pm
- Bio/Factory/SequenceProcessorI.pm
- Bio/Factory/SequenceStreamI.pm
- Bio/Factory/TreeFactoryI.pm
- Bio/FeatureHolderI.pm
- Bio/FeatureIO.pm
- Bio/FeatureIO/bed.pm
- Bio/FeatureIO/gff.pm
- Bio/FeatureIO/gtf.pm
- Bio/FeatureIO/interpro.pm
- Bio/FeatureIO/ptt.pm
- Bio/Graph/Edge.pm
- Bio/Graph/IO.pm
- Bio/Graph/IO/dip.pm
- Bio/Graph/IO/psi_xml.pm
- Bio/Graph/ProteinGraph.pm
- Bio/Graph/SimpleGraph.pm
- Bio/Graph/SimpleGraph/Traversal.pm
- Bio/Graphics.pm
- Bio/Graphics/ConfiguratorI.pm
- Bio/Graphics/Feature.pm
- Bio/Graphics/FeatureBase.pm
- Bio/Graphics/FeatureFile.pm
- Bio/Graphics/FeatureFile/Iterator.pm
- Bio/Graphics/Glyph.pm
- Bio/Graphics/Glyph/Factory.pm
- Bio/Graphics/Glyph/alignment.pm
- Bio/Graphics/Glyph/anchored_arrow.pm
- Bio/Graphics/Glyph/arrow.pm
- Bio/Graphics/Glyph/box.pm
- Bio/Graphics/Glyph/broken_line.pm
- Bio/Graphics/Glyph/cds.pm
- Bio/Graphics/Glyph/christmas_arrow.pm
- Bio/Graphics/Glyph/crossbox.pm
- Bio/Graphics/Glyph/dashed_line.pm
- Bio/Graphics/Glyph/diamond.pm
- Bio/Graphics/Glyph/dna.pm
- Bio/Graphics/Glyph/dot.pm
- Bio/Graphics/Glyph/dumbbell.pm
- Bio/Graphics/Glyph/ellipse.pm
- Bio/Graphics/Glyph/ex.pm
- Bio/Graphics/Glyph/extending_arrow.pm
- Bio/Graphics/Glyph/flag.pm
- Bio/Graphics/Glyph/gene.pm
- Bio/Graphics/Glyph/generic.pm
- Bio/Graphics/Glyph/graded_segments.pm
- Bio/Graphics/Glyph/group.pm
- Bio/Graphics/Glyph/heterogeneous_segments.pm
- Bio/Graphics/Glyph/image.pm
- Bio/Graphics/Glyph/lightning.pm
- Bio/Graphics/Glyph/line.pm
- Bio/Graphics/Glyph/merge_parts.pm
- Bio/Graphics/Glyph/merged_alignment.pm
- Bio/Graphics/Glyph/minmax.pm
- Bio/Graphics/Glyph/oval.pm
- Bio/Graphics/Glyph/pentagram.pm
- Bio/Graphics/Glyph/pinsertion.pm
- Bio/Graphics/Glyph/primers.pm
- Bio/Graphics/Glyph/processed_transcript.pm
- Bio/Graphics/Glyph/protein.pm
- Bio/Graphics/Glyph/ragged_ends.pm
- Bio/Graphics/Glyph/redgreen_box.pm
- Bio/Graphics/Glyph/redgreen_segment.pm
- Bio/Graphics/Glyph/repeating_shape.pm
- Bio/Graphics/Glyph/rndrect.pm
- Bio/Graphics/Glyph/ruler_arrow.pm
- Bio/Graphics/Glyph/saw_teeth.pm
- Bio/Graphics/Glyph/segmented_keyglyph.pm
- Bio/Graphics/Glyph/segments.pm
- Bio/Graphics/Glyph/so_transcript.pm
- Bio/Graphics/Glyph/span.pm
- Bio/Graphics/Glyph/splice_site.pm
- Bio/Graphics/Glyph/text_in_box.pm
- Bio/Graphics/Glyph/three_letters.pm
- Bio/Graphics/Glyph/tic_tac_toe.pm
- Bio/Graphics/Glyph/toomany.pm
- Bio/Graphics/Glyph/track.pm
- Bio/Graphics/Glyph/transcript.pm
- Bio/Graphics/Glyph/transcript2.pm
- Bio/Graphics/Glyph/translation.pm
- Bio/Graphics/Glyph/triangle.pm
- Bio/Graphics/Glyph/two_bolts.pm
- Bio/Graphics/Glyph/wave.pm
- Bio/Graphics/Glyph/weighted_arrow.pm
- Bio/Graphics/Glyph/whiskerplot.pm
- Bio/Graphics/Glyph/xyplot.pm
- Bio/Graphics/Panel.pm
- Bio/Graphics/Pictogram.pm
- Bio/Graphics/RendererI.pm
- Bio/Graphics/Util.pm
- Bio/IdCollectionI.pm
- Bio/IdentifiableI.pm
- Bio/Index/Abstract.pm
- Bio/Index/AbstractSeq.pm
- Bio/Index/Blast.pm
- Bio/Index/EMBL.pm
- Bio/Index/Fasta.pm
- Bio/Index/Fastq.pm
- Bio/Index/GenBank.pm
- Bio/Index/Hmmer.pm
- Bio/Index/Qual.pm
- Bio/Index/SwissPfam.pm
- Bio/Index/Swissprot.pm
- Bio/LiveSeq/AARange.pm
- Bio/LiveSeq/Chain.pm
- Bio/LiveSeq/ChainI.pm
- Bio/LiveSeq/DNA.pm
- Bio/LiveSeq/Exon.pm
- Bio/LiveSeq/Gene.pm
- Bio/LiveSeq/IO/BioPerl.pm
- Bio/LiveSeq/IO/Loader.pm
- Bio/LiveSeq/IO/README
- Bio/LiveSeq/Intron.pm
- Bio/LiveSeq/Mutation.pm
- Bio/LiveSeq/Mutator.pm
- Bio/LiveSeq/Prim_Transcript.pm
- Bio/LiveSeq/Range.pm
- Bio/LiveSeq/Repeat_Region.pm
- Bio/LiveSeq/Repeat_Unit.pm
- Bio/LiveSeq/SeqI.pm
- Bio/LiveSeq/Transcript.pm
- Bio/LiveSeq/Translation.pm
- Bio/LocatableSeq.pm
- Bio/Location/Atomic.pm
- Bio/Location/AvWithinCoordPolicy.pm
- Bio/Location/CoordinatePolicyI.pm
- Bio/Location/Fuzzy.pm
- Bio/Location/FuzzyLocationI.pm
- Bio/Location/NarrowestCoordPolicy.pm
- Bio/Location/Simple.pm
- Bio/Location/Split.pm
- Bio/Location/SplitLocationI.pm
- Bio/Location/WidestCoordPolicy.pm
- Bio/LocationI.pm
- Bio/Map/Clone.pm
- Bio/Map/Contig.pm
- Bio/Map/CytoMap.pm
- Bio/Map/CytoMarker.pm
- Bio/Map/CytoPosition.pm
- Bio/Map/EntityI.pm
- Bio/Map/FPCMarker.pm
- Bio/Map/LinkageMap.pm
- Bio/Map/LinkagePosition.pm
- Bio/Map/MapI.pm
- Bio/Map/Mappable.pm
- Bio/Map/MappableI.pm
- Bio/Map/Marker.pm
- Bio/Map/MarkerI.pm
- Bio/Map/Microsatellite.pm
- Bio/Map/OrderedPosition.pm
- Bio/Map/OrderedPositionWithDistance.pm
- Bio/Map/Physical.pm
- Bio/Map/Position.pm
- Bio/Map/PositionHandler.pm
- Bio/Map/PositionHandlerI.pm
- Bio/Map/PositionI.pm
- Bio/Map/Relative.pm
- Bio/Map/RelativeI.pm
- Bio/Map/SimpleMap.pm
- Bio/MapIO.pm
- Bio/MapIO/fpc.pm
- Bio/MapIO/mapmaker.pm
- Bio/Matrix/Generic.pm
- Bio/Matrix/IO.pm
- Bio/Matrix/IO/phylip.pm
- Bio/Matrix/IO/scoring.pm
- Bio/Matrix/MatrixI.pm
- Bio/Matrix/PSM/IO.pm
- Bio/Matrix/PSM/IO/mast.pm
- Bio/Matrix/PSM/IO/masta.pm
- Bio/Matrix/PSM/IO/meme.pm
- Bio/Matrix/PSM/IO/psiblast.pm
- Bio/Matrix/PSM/IO/transfac.pm
- Bio/Matrix/PSM/InstanceSite.pm
- Bio/Matrix/PSM/InstanceSiteI.pm
- Bio/Matrix/PSM/ProtMatrix.pm
- Bio/Matrix/PSM/ProtPsm.pm
- Bio/Matrix/PSM/Psm.pm
- Bio/Matrix/PSM/PsmHeader.pm
- Bio/Matrix/PSM/PsmHeaderI.pm
- Bio/Matrix/PSM/PsmI.pm
- Bio/Matrix/PSM/SiteMatrix.pm
- Bio/Matrix/PSM/SiteMatrixI.pm
- Bio/Matrix/PhylipDist.pm
- Bio/Matrix/Scoring.pm
- Bio/Ontology/DocumentRegistry.pm
- Bio/Ontology/GOterm.pm
- Bio/Ontology/InterProTerm.pm
- Bio/Ontology/OBOEngine.pm
- Bio/Ontology/OBOterm.pm
- Bio/Ontology/Ontology.pm
- Bio/Ontology/OntologyEngineI.pm
- Bio/Ontology/OntologyI.pm
- Bio/Ontology/OntologyStore.pm
- Bio/Ontology/Path.pm
- Bio/Ontology/PathI.pm
- Bio/Ontology/Relationship.pm
- Bio/Ontology/RelationshipFactory.pm
- Bio/Ontology/RelationshipI.pm
- Bio/Ontology/RelationshipType.pm
- Bio/Ontology/SimpleGOEngine.pm
- Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
- Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm
- Bio/Ontology/SimpleOntologyEngine.pm
- Bio/Ontology/Term.pm
- Bio/Ontology/TermFactory.pm
- Bio/Ontology/TermI.pm
- Bio/OntologyIO.pm
- Bio/OntologyIO/Handlers/BaseSAXHandler.pm
- Bio/OntologyIO/Handlers/InterProHandler.pm
- Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
- Bio/OntologyIO/InterProParser.pm
- Bio/OntologyIO/dagflat.pm
- Bio/OntologyIO/goflat.pm
- Bio/OntologyIO/obo.pm
- Bio/OntologyIO/simplehierarchy.pm
- Bio/OntologyIO/soflat.pm
- Bio/Perl.pm
- Bio/Phenotype/Correlate.pm
- Bio/Phenotype/MeSH/Term.pm
- Bio/Phenotype/MeSH/Twig.pm
- Bio/Phenotype/Measure.pm
- Bio/Phenotype/OMIM/MiniMIMentry.pm
- Bio/Phenotype/OMIM/OMIMentry.pm
- Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm
- Bio/Phenotype/OMIM/OMIMparser.pm
- Bio/Phenotype/Phenotype.pm
- Bio/Phenotype/PhenotypeI.pm
- Bio/PopGen/Genotype.pm
- Bio/PopGen/GenotypeI.pm
- Bio/PopGen/HtSNP.pm
- Bio/PopGen/IO.pm
- Bio/PopGen/IO/csv.pm
- Bio/PopGen/IO/hapmap.pm
- Bio/PopGen/IO/phase.pm
- Bio/PopGen/IO/prettybase.pm
- Bio/PopGen/Individual.pm
- Bio/PopGen/IndividualI.pm
- Bio/PopGen/Marker.pm
- Bio/PopGen/MarkerI.pm
- Bio/PopGen/PopStats.pm
- Bio/PopGen/Population.pm
- Bio/PopGen/PopulationI.pm
- Bio/PopGen/Simulation/Coalescent.pm
- Bio/PopGen/Simulation/GeneticDrift.pm
- Bio/PopGen/Statistics.pm
- Bio/PopGen/TagHaplotype.pm
- Bio/PopGen/Utilities.pm
- Bio/PrimarySeq.pm
- Bio/PrimarySeqI.pm
- Bio/PullParserI.pm
- Bio/Range.pm
- Bio/RangeI.pm
- Bio/Restriction/Analysis.pm
- Bio/Restriction/Enzyme.pm
- Bio/Restriction/Enzyme/MultiCut.pm
- Bio/Restriction/Enzyme/MultiSite.pm
- Bio/Restriction/EnzymeCollection.pm
- Bio/Restriction/EnzymeI.pm
- Bio/Restriction/IO.pm
- Bio/Restriction/IO/bairoch.pm
- Bio/Restriction/IO/base.pm
- Bio/Restriction/IO/itype2.pm
- Bio/Restriction/IO/withrefm.pm
- Bio/Root/Exception.pm
- Bio/Root/HTTPget.pm
- Bio/Root/IO.pm
- Bio/Root/Root.pm
- Bio/Root/RootI.pm
- Bio/Root/Storable.pm
- Bio/Root/Version.pm
- Bio/Search/BlastStatistics.pm
- Bio/Search/BlastUtils.pm
- Bio/Search/DatabaseI.pm
- Bio/Search/GenericDatabase.pm
- Bio/Search/GenericStatistics.pm
- Bio/Search/HSP/BlastHSP.pm
- Bio/Search/HSP/FastaHSP.pm
- Bio/Search/HSP/GenericHSP.pm
- Bio/Search/HSP/HMMERHSP.pm
- Bio/Search/HSP/HSPFactory.pm
- Bio/Search/HSP/HSPI.pm
- Bio/Search/HSP/HmmpfamHSP.pm
- Bio/Search/HSP/PSLHSP.pm
- Bio/Search/HSP/PsiBlastHSP.pm
- Bio/Search/HSP/PullHSPI.pm
- Bio/Search/HSP/WABAHSP.pm
- Bio/Search/Hit/BlastHit.pm
- Bio/Search/Hit/Fasta.pm
- Bio/Search/Hit/GenericHit.pm
- Bio/Search/Hit/HMMERHit.pm
- Bio/Search/Hit/HitFactory.pm
- Bio/Search/Hit/HitI.pm
- Bio/Search/Hit/HmmpfamHit.pm
- Bio/Search/Hit/PsiBlastHit.pm
- Bio/Search/Hit/PullHitI.pm
- Bio/Search/Iteration/GenericIteration.pm
- Bio/Search/Iteration/IterationI.pm
- Bio/Search/Processor.pm
- Bio/Search/Result/BlastResult.pm
- Bio/Search/Result/GenericResult.pm
- Bio/Search/Result/HMMERResult.pm
- Bio/Search/Result/HmmpfamResult.pm
- Bio/Search/Result/PullResultI.pm
- Bio/Search/Result/ResultFactory.pm
- Bio/Search/Result/ResultI.pm
- Bio/Search/Result/WABAResult.pm
- Bio/Search/SearchUtils.pm
- Bio/Search/StatisticsI.pm
- Bio/SearchDist.pm
- Bio/SearchIO.pm
- Bio/SearchIO/EventHandlerI.pm
- Bio/SearchIO/FastHitEventBuilder.pm
- Bio/SearchIO/IteratedSearchResultEventBuilder.pm
- Bio/SearchIO/SearchResultEventBuilder.pm
- Bio/SearchIO/SearchWriterI.pm
- Bio/SearchIO/Writer/BSMLResultWriter.pm
- Bio/SearchIO/Writer/GbrowseGFF.pm
- Bio/SearchIO/Writer/HSPTableWriter.pm
- Bio/SearchIO/Writer/HTMLResultWriter.pm
- Bio/SearchIO/Writer/HitTableWriter.pm
- Bio/SearchIO/Writer/ResultTableWriter.pm
- Bio/SearchIO/Writer/TextResultWriter.pm
- Bio/SearchIO/axt.pm
- Bio/SearchIO/blast.pm
- Bio/SearchIO/blasttable.pm
- Bio/SearchIO/blastxml.pm
- Bio/SearchIO/exonerate.pm
- Bio/SearchIO/fasta.pm
- Bio/SearchIO/hmmer.pm
- Bio/SearchIO/hmmer_pull.pm
- Bio/SearchIO/megablast.pm
- Bio/SearchIO/psl.pm
- Bio/SearchIO/sim4.pm
- Bio/SearchIO/waba.pm
- Bio/SearchIO/wise.pm
- Bio/Seq.pm
- Bio/Seq/BaseSeqProcessor.pm
- Bio/Seq/EncodedSeq.pm
- Bio/Seq/LargeLocatableSeq.pm
- Bio/Seq/LargePrimarySeq.pm
- Bio/Seq/LargeSeq.pm
- Bio/Seq/LargeSeqI.pm
- Bio/Seq/Meta.pm
- Bio/Seq/Meta/Array.pm
- Bio/Seq/MetaI.pm
- Bio/Seq/PrimaryQual.pm
- Bio/Seq/PrimedSeq.pm
- Bio/Seq/QualI.pm
- Bio/Seq/Quality.pm
- Bio/Seq/RichSeq.pm
- Bio/Seq/RichSeqI.pm
- Bio/Seq/SeqBuilder.pm
- Bio/Seq/SeqFactory.pm
- Bio/Seq/SeqFastaSpeedFactory.pm
- Bio/Seq/SeqWithQuality.pm
- Bio/Seq/SequenceTrace.pm
- Bio/Seq/TraceI.pm
- Bio/SeqAnalysisParserI.pm
- Bio/SeqFeature/Annotated.pm
- Bio/SeqFeature/AnnotationAdaptor.pm
- Bio/SeqFeature/Collection.pm
- Bio/SeqFeature/CollectionI.pm
- Bio/SeqFeature/Computation.pm
- Bio/SeqFeature/FeaturePair.pm
- Bio/SeqFeature/Gene/Exon.pm
- Bio/SeqFeature/Gene/ExonI.pm
- Bio/SeqFeature/Gene/GeneStructure.pm
- Bio/SeqFeature/Gene/GeneStructureI.pm
- Bio/SeqFeature/Gene/Intron.pm
- Bio/SeqFeature/Gene/NC_Feature.pm
- Bio/SeqFeature/Gene/Poly_A_site.pm
- Bio/SeqFeature/Gene/Promoter.pm
- Bio/SeqFeature/Gene/Transcript.pm
- Bio/SeqFeature/Gene/TranscriptI.pm
- Bio/SeqFeature/Gene/UTR.pm
- Bio/SeqFeature/Generic.pm
- Bio/SeqFeature/PositionProxy.pm
- Bio/SeqFeature/Primer.pm
- Bio/SeqFeature/SiRNA/Oligo.pm
- Bio/SeqFeature/SiRNA/Pair.pm
- Bio/SeqFeature/Similarity.pm
- Bio/SeqFeature/SimilarityPair.pm
- Bio/SeqFeature/Tools/FeatureNamer.pm
- Bio/SeqFeature/Tools/IDHandler.pm
- Bio/SeqFeature/Tools/TypeMapper.pm
- Bio/SeqFeature/Tools/Unflattener.pm
- Bio/SeqFeature/TypedSeqFeatureI.pm
- Bio/SeqFeatureI.pm
- Bio/SeqI.pm
- Bio/SeqIO.pm
- Bio/SeqIO/FTHelper.pm
- Bio/SeqIO/MultiFile.pm
- Bio/SeqIO/abi.pm
- Bio/SeqIO/ace.pm
- Bio/SeqIO/agave.pm
- Bio/SeqIO/alf.pm
- Bio/SeqIO/asciitree.pm
- Bio/SeqIO/bsml.pm
- Bio/SeqIO/bsml_sax.pm
- Bio/SeqIO/chadoxml.pm
- Bio/SeqIO/chaos.pm
- Bio/SeqIO/chaosxml.pm
- Bio/SeqIO/ctf.pm
- Bio/SeqIO/embl.pm
- Bio/SeqIO/entrezgene.pm
- Bio/SeqIO/excel.pm
- Bio/SeqIO/exp.pm
- Bio/SeqIO/fasta.pm
- Bio/SeqIO/fastq.pm
- Bio/SeqIO/game.pm
- Bio/SeqIO/game/featHandler.pm
- Bio/SeqIO/game/gameHandler.pm
- Bio/SeqIO/game/gameSubs.pm
- Bio/SeqIO/game/gameWriter.pm
- Bio/SeqIO/game/seqHandler.pm
- Bio/SeqIO/gcg.pm
- Bio/SeqIO/genbank.pm
- Bio/SeqIO/interpro.pm
- Bio/SeqIO/kegg.pm
- Bio/SeqIO/largefasta.pm
- Bio/SeqIO/lasergene.pm
- Bio/SeqIO/locuslink.pm
- Bio/SeqIO/metafasta.pm
- Bio/SeqIO/phd.pm
- Bio/SeqIO/pir.pm
- Bio/SeqIO/pln.pm
- Bio/SeqIO/qual.pm
- Bio/SeqIO/raw.pm
- Bio/SeqIO/scf.pm
- Bio/SeqIO/strider.pm
- Bio/SeqIO/swiss.pm
- Bio/SeqIO/tab.pm
- Bio/SeqIO/table.pm
- Bio/SeqIO/tigr.pm
- Bio/SeqIO/tigrxml.pm
- Bio/SeqIO/tinyseq.pm
- Bio/SeqIO/tinyseq/tinyseqHandler.pm
- Bio/SeqIO/ztr.pm
- Bio/SeqUtils.pm
- Bio/SimpleAlign.pm
- Bio/SimpleAnalysisI.pm
- Bio/Species.pm
- Bio/Structure/Atom.pm
- Bio/Structure/Chain.pm
- Bio/Structure/Entry.pm
- Bio/Structure/IO.pm
- Bio/Structure/IO/pdb.pm
- Bio/Structure/Model.pm
- Bio/Structure/Residue.pm
- Bio/Structure/SecStr/DSSP/Res.pm
- Bio/Structure/SecStr/STRIDE/Res.pm
- Bio/Structure/StructureI.pm
- Bio/Symbol/Alphabet.pm
- Bio/Symbol/AlphabetI.pm
- Bio/Symbol/DNAAlphabet.pm
- Bio/Symbol/ProteinAlphabet.pm
- Bio/Symbol/README.Symbol
- Bio/Symbol/Symbol.pm
- Bio/Symbol/SymbolI.pm
- Bio/Taxon.pm
- Bio/Taxonomy.pm
- Bio/Taxonomy/FactoryI.pm
- Bio/Taxonomy/Node.pm
- Bio/Taxonomy/Taxon.pm
- Bio/Taxonomy/Tree.pm
- Bio/Tools/AlignFactory.pm
- Bio/Tools/Alignment/Consed.pm
- Bio/Tools/Alignment/Trim.pm
- Bio/Tools/Analysis/DNA/ESEfinder.pm
- Bio/Tools/Analysis/Protein/Domcut.pm
- Bio/Tools/Analysis/Protein/ELM.pm
- Bio/Tools/Analysis/Protein/GOR4.pm
- Bio/Tools/Analysis/Protein/HNN.pm
- Bio/Tools/Analysis/Protein/Mitoprot.pm
- Bio/Tools/Analysis/Protein/NetPhos.pm
- Bio/Tools/Analysis/Protein/Scansite.pm
- Bio/Tools/Analysis/Protein/Sopma.pm
- Bio/Tools/Analysis/SimpleAnalysisBase.pm
- Bio/Tools/AnalysisResult.pm
- Bio/Tools/BPbl2seq.pm
- Bio/Tools/BPlite.pm
- Bio/Tools/BPlite/HSP.pm
- Bio/Tools/BPlite/Iteration.pm
- Bio/Tools/BPlite/Sbjct.pm
- Bio/Tools/BPpsilite.pm
- Bio/Tools/Blat.pm
- Bio/Tools/CodonTable.pm
- Bio/Tools/Coil.pm
- Bio/Tools/ECnumber.pm
- Bio/Tools/EMBOSS/Palindrome.pm
- Bio/Tools/EPCR.pm
- Bio/Tools/ERPIN.pm
- Bio/Tools/ESTScan.pm
- Bio/Tools/Eponine.pm
- Bio/Tools/Est2Genome.pm
- Bio/Tools/Fgenesh.pm
- Bio/Tools/FootPrinter.pm
- Bio/Tools/GFF.pm
- Bio/Tools/Gel.pm
- Bio/Tools/Geneid.pm
- Bio/Tools/Genemark.pm
- Bio/Tools/Genewise.pm
- Bio/Tools/Genomewise.pm
- Bio/Tools/Genscan.pm
- Bio/Tools/Glimmer.pm
- Bio/Tools/Grail.pm
- Bio/Tools/GuessSeqFormat.pm
- Bio/Tools/HMM.pm
- Bio/Tools/HMMER/Domain.pm
- Bio/Tools/HMMER/Results.pm
- Bio/Tools/HMMER/Set.pm
- Bio/Tools/Hmmpfam.pm
- Bio/Tools/IUPAC.pm
- Bio/Tools/Lucy.pm
- Bio/Tools/MZEF.pm
- Bio/Tools/OddCodes.pm
- Bio/Tools/Phylo/Molphy.pm
- Bio/Tools/Phylo/Molphy/Result.pm
- Bio/Tools/Phylo/PAML.pm
- Bio/Tools/Phylo/PAML/ModelResult.pm
- Bio/Tools/Phylo/PAML/Result.pm
- Bio/Tools/Phylo/Phylip/ProtDist.pm
- Bio/Tools/Prediction/Exon.pm
- Bio/Tools/Prediction/Gene.pm
- Bio/Tools/Primer/Assessor/Base.pm
- Bio/Tools/Primer/AssessorI.pm
- Bio/Tools/Primer/Feature.pm
- Bio/Tools/Primer/Pair.pm
- Bio/Tools/Primer3.pm
- Bio/Tools/Prints.pm
- Bio/Tools/Profile.pm
- Bio/Tools/Promoterwise.pm
- Bio/Tools/PrositeScan.pm
- Bio/Tools/Pseudowise.pm
- Bio/Tools/QRNA.pm
- Bio/Tools/RNAMotif.pm
- Bio/Tools/RandomDistFunctions.pm
- Bio/Tools/RepeatMasker.pm
- Bio/Tools/RestrictionEnzyme.pm
- Bio/Tools/Run/GenericParameters.pm
- Bio/Tools/Run/ParametersI.pm
- Bio/Tools/Run/README
- Bio/Tools/Run/RemoteBlast.pm
- Bio/Tools/Run/StandAloneBlast.pm
- Bio/Tools/Run/WrapperBase.pm
- Bio/Tools/Seg.pm
- Bio/Tools/SeqPattern.pm
- Bio/Tools/SeqStats.pm
- Bio/Tools/SeqWords.pm
- Bio/Tools/SiRNA.pm
- Bio/Tools/SiRNA/Ruleset/saigo.pm
- Bio/Tools/SiRNA/Ruleset/tuschl.pm
- Bio/Tools/Sigcleave.pm
- Bio/Tools/Signalp.pm
- Bio/Tools/Sim4/Exon.pm
- Bio/Tools/Sim4/Results.pm
- Bio/Tools/Spidey/Exon.pm
- Bio/Tools/Spidey/Results.pm
- Bio/Tools/Tmhmm.pm
- Bio/Tools/dpAlign.pm
- Bio/Tools/ipcress.pm
- Bio/Tools/isPcr.pm
- Bio/Tools/pICalculator.pm
- Bio/Tools/pSW.pm
- Bio/Tools/tRNAscanSE.pm
- Bio/Tree/AlleleNode.pm
- Bio/Tree/Compatible.pm
- Bio/Tree/DistanceFactory.pm
- Bio/Tree/Draw/Cladogram.pm
- Bio/Tree/Node.pm
- Bio/Tree/NodeI.pm
- Bio/Tree/NodeNHX.pm
- Bio/Tree/RandomFactory.pm
- Bio/Tree/Statistics.pm
- Bio/Tree/Tree.pm
- Bio/Tree/TreeFunctionsI.pm
- Bio/Tree/TreeI.pm
- Bio/TreeIO.pm
- Bio/TreeIO/TreeEventBuilder.pm
- Bio/TreeIO/cluster.pm
- Bio/TreeIO/lintree.pm
- Bio/TreeIO/newick.pm
- Bio/TreeIO/nexus.pm
- Bio/TreeIO/nhx.pm
- Bio/TreeIO/pag.pm
- Bio/TreeIO/svggraph.pm
- Bio/TreeIO/tabtree.pm
- Bio/UpdateableSeqI.pm
- Bio/Variation/AAChange.pm
- Bio/Variation/AAReverseMutate.pm
- Bio/Variation/Allele.pm
- Bio/Variation/DNAMutation.pm
- Bio/Variation/IO.pm
- Bio/Variation/IO/flat.pm
- Bio/Variation/IO/xml.pm
- Bio/Variation/README
- Bio/Variation/RNAChange.pm
- Bio/Variation/SNP.pm
- Bio/Variation/SeqDiff.pm
- Bio/Variation/VariantI.pm
- Bio/WebAgent.pm
- Build.PL
- Changes
- DEPENDENCIES
- DEPRECATED
- INSTALL
- INSTALL.WIN
- LICENSE
- MANIFEST
- META.yml
- Makefile.PL
- ModuleBuildBioperl.pm
- PLATFORMS
- README
- doc/Deobfuscator/Build.PL
- doc/Deobfuscator/Changes
- doc/Deobfuscator/LICENSE
- doc/Deobfuscator/MANIFEST
- doc/Deobfuscator/META.yml
- doc/Deobfuscator/Makefile.PL
- doc/Deobfuscator/README
- doc/Deobfuscator/bin/deob_index.pl
- doc/Deobfuscator/cgi-bin/deob_detail.cgi
- doc/Deobfuscator/cgi-bin/deob_flowchart.png
- doc/Deobfuscator/cgi-bin/deob_help.html
- doc/Deobfuscator/cgi-bin/deob_interface.cgi
- doc/Deobfuscator/lib/Deobfuscator.pm
- doc/Deobfuscator/t/00.load.t
- doc/Deobfuscator/t/pod.t
- doc/README
- doc/makedoc.PL
- examples/Bio-DB-GFF/load_ucsc.pl
- examples/align/align_on_codons.pl
- examples/align/aligntutorial.pl
- examples/align/clustalw.pl
- examples/align/simplealign.pl
- examples/biblio/biblio-eutils-example.pl
- examples/biblio/biblio-soap-example.pl
- examples/biblio/biblio_soap.pl
- examples/biographics/all_glyphs.pl
- examples/biographics/dynamic_glyphs.pl
- examples/biographics/feature_data.gff
- examples/biographics/feature_data.txt
- examples/biographics/lots_of_glyphs.pl
- examples/biographics/render_sequence.pl
- examples/bioperl.pl
- examples/cluster/dbsnp.pl
- examples/contributed/nmrpdb_parse.pl
- examples/contributed/prosite2perl.pl
- examples/contributed/rebase2list.pl
- examples/db/dbfetch
- examples/db/est_tissue_query.pl
- examples/db/gb2features.pl
- examples/db/getGenBank.pl
- examples/db/get_seqs.pl
- examples/db/rfetch.pl
- examples/db/use_registry.pl
- examples/generate_random_seq.pl
- examples/liveseq/change_gene.pl
- examples/longorf.pl
- examples/make_primers.pl
- examples/popgen/parse_calc_stats.pl
- examples/rev_and_trans.pl
- examples/revcom_dir.pl
- examples/root/README
- examples/root/exceptions1.pl
- examples/root/exceptions2.pl
- examples/root/exceptions3.pl
- examples/root/exceptions4.pl
- examples/root/lib/Bio/PrimarySeq.pm
- examples/root/lib/Bio/PrimarySeqI.pm
- examples/root/lib/Bio/Seq.pm
- examples/root/lib/Bio/SeqI.pm
- examples/root/lib/TestInterface.pm
- examples/root/lib/TestObject.pm
- examples/searchio/blast_example.pl
- examples/searchio/custom_writer.pl
- examples/searchio/hitwriter.pl
- examples/searchio/hspwriter.pl
- examples/searchio/htmlwriter.pl
- examples/searchio/psiblast_features.pl
- examples/searchio/psiblast_iterations.pl
- examples/searchio/rawwriter.pl
- examples/searchio/resultwriter.pl
- examples/searchio/waba2gff.pl
- examples/searchio/waba2gff3.pl
- examples/sirna/TAG
- examples/sirna/rnai_finder.cgi
- examples/structure/structure-io.pl
- examples/subsequence.cgi
- examples/tk/gsequence.pl
- examples/tk/hitdisplay.pl
- examples/tools/extract_genes.pl
- examples/tools/gb_to_gff.pl
- examples/tools/gff2ps.pl
- examples/tools/parse_codeml.pl
- examples/tools/psw.pl
- examples/tools/run_genscan.pl
- examples/tools/run_primer3.pl
- examples/tools/seq_pattern.pl
- examples/tools/standaloneblast.pl
- examples/tree/paup2phylip.pl
- maintenance/README
- maintenance/authors.pl
- maintenance/check_NAME.pl
- maintenance/check_URLs.pl
- maintenance/modules.pl
- maintenance/ncbi_blast_switches.pl
- maintenance/pod.pl
- maintenance/symlink_script.pl
- maintenance/symlink_scripts.PLS
- maintenance/version.pl
- models/README
- models/biblio.dia
- models/bio_liveseq_variation.dia
- models/bio_map.dia
- models/bio_restriction.dia
- models/bioperl.dia
- models/coordinatemapper.dia
- models/map_proposal.txt
- models/maps_and_markers.dia
- models/popgen.dia
- models/population_proposal.txt
- scripts/Bio-DB-GFF/README
- scripts/Bio-DB-GFF/TAG
- scripts/Bio-DB-GFF/bp_genbank2gff.PLS
- scripts/Bio-DB-GFF/bulk_load_gff.PLS
- scripts/Bio-DB-GFF/fast_load_gff.PLS
- scripts/Bio-DB-GFF/genbank2gff3.PLS
- scripts/Bio-DB-GFF/generate_histogram.PLS
- scripts/Bio-DB-GFF/load_gff.PLS
- scripts/Bio-DB-GFF/meta_gff.PLS
- scripts/Bio-DB-GFF/process_gadfly.PLS
- scripts/Bio-DB-GFF/process_sgd.PLS
- scripts/Bio-DB-GFF/process_wormbase.PLS
- scripts/Bio-SeqFeature-Store/bp_seqfeature_load.PLS
- scripts/DB/TAG
- scripts/DB/biofetch_genbank_proxy.PLS
- scripts/DB/bioflat_index.PLS
- scripts/DB/biogetseq.PLS
- scripts/DB/flanks.PLS
- scripts/README
- scripts/biblio/TAG
- scripts/biblio/biblio.PLS
- scripts/biographics/bp_embl2picture.PLS
- scripts/biographics/bp_glyphs1-demo.PLS
- scripts/biographics/bp_glyphs2-demo.PLS
- scripts/das/README
- scripts/das/TAG
- scripts/graphics/README
- scripts/graphics/TAG
- scripts/graphics/contig_draw.PLS
- scripts/graphics/feature_draw.PLS
- scripts/graphics/frend.PLS
- scripts/graphics/search_overview.PLS
- scripts/index/TAG
- scripts/index/bp_fetch.PLS
- scripts/index/bp_index.PLS
- scripts/index/bp_seqret.PLS
- scripts/popgen/composite_LD.PLS
- scripts/popgen/heterogeneity_test.PLS
- scripts/searchio/README
- scripts/searchio/TAG
- scripts/searchio/fastam9_to_table.PLS
- scripts/searchio/filter_search.PLS
- scripts/searchio/hmmer_to_table.PLS
- scripts/searchio/parse_hmmsearch.PLS
- scripts/searchio/search2table.PLS
- scripts/seq/TAG
- scripts/seq/extract_feature_seq.PLS
- scripts/seq/make_mrna_protein.PLS
- scripts/seq/seqconvert.PLS
- scripts/seq/split_seq.PLS
- scripts/seq/translate_seq.PLS
- scripts/seq/unflatten_seq.PLS
- scripts/seqstats/TAG
- scripts/seqstats/aacomp.PLS
- scripts/seqstats/chaos_plot.PLS
- scripts/seqstats/gccalc.PLS
- scripts/seqstats/oligo_count.PLS
- scripts/taxa/TAG
- scripts/taxa/classify_hits_kingdom.PLS
- scripts/taxa/local_taxonomydb_query.PLS
- scripts/taxa/query_entrez_taxa.PLS
- scripts/taxa/taxid4species.PLS
- scripts/taxa/taxonomy2tree.PLS
- scripts/tree/TAG
- scripts/tree/blast2tree.PLS
- scripts/tree/nexus2nh.PLS
- scripts/tree/tree2pag.PLS
- scripts/utilities/README
- scripts/utilities/TAG
- scripts/utilities/bp_mrtrans.PLS
- scripts/utilities/bp_nrdb.PLS
- scripts/utilities/bp_sreformat.PLS
- scripts/utilities/dbsplit.PLS
- scripts/utilities/mask_by_search.PLS
- scripts/utilities/mutate.PLS
- scripts/utilities/pairwise_kaks.PLS
- scripts/utilities/remote_blast.PLS
- scripts/utilities/search2BSML.PLS
- scripts/utilities/search2alnblocks.PLS
- scripts/utilities/search2gff.PLS
- scripts/utilities/search2tribe.PLS
- scripts/utilities/seq_length.PLS
- t/AAChange.t
- t/AAReverseMutate.t
- t/AlignIO.t
- t/AlignStats.t
- t/AlignUtil.t
- t/Allele.t
- t/Alphabet.t
- t/Annotation.t
- t/AnnotationAdaptor.t
- t/Assembly.t
- t/Biblio.t
- t/BiblioReferences.t
- t/Biblio_biofetch.t
- t/Biblio_eutils.t
- t/BioDBGFF.t
- t/BioDBSeqFeature.t
- t/BioFetch_DB.t
- t/BioGraphics.t
- t/BlastIndex.t
- t/Chain.t
- t/ClusterIO.t
- t/Coalescent.t
- t/CodonTable.t
- t/Compatible.t
- t/CoordinateGraph.t
- t/CoordinateMapper.t
- t/Correlate.t
- t/CytoMap.t
- t/DB.t
- t/DBCUTG.t
- t/DBFasta.t
- t/DNAMutation.t
- t/Domcut.t
- t/ECnumber.t
- t/ELM.t
- t/EMBL_DB.t
- t/EMBOSS_Tools.t
- t/ESEfinder.t
- t/EUtilities.t
- t/EncodedSeq.t
- t/Exception.t
- t/Exonerate.t
- t/FeatureHolder.x
- t/FeatureIO.t
- t/FootPrinter.t
- t/GDB.t
- t/GFF.t
- t/GOR4.t
- t/GOterm.t
- t/GbrowseGFF.t
- t/Gel.t
- t/GeneCoordinateMapper.t
- t/Geneid.t
- t/Genewise.t
- t/Genomewise.t
- t/Genpred.t
- t/GraphAdaptor.t
- t/GuessSeqFormat.t
- t/HNN.t
- t/HtSNP.t
- t/IUPAC.t
- t/Index.t
- t/InstanceSite.t
- t/InterProParser.t
- t/LargeLocatableSeq.t
- t/LinkageMap.t
- t/LiveSeq.t
- t/LocatableSeq.t
- t/Location.t
- t/LocationFactory.t
- t/LocusLink.t
- t/Map.t
- t/MapIO.t
- t/Matrix.t
- t/MeSH.t
- t/Measure.t
- t/MetaSeq.t
- t/MicrosatelliteMarker.t
- t/MiniMIMentry.t
- t/MitoProt.t
- t/Molphy.t
- t/MultiFile.t
- t/Mutation.t
- t/Mutator.t
- t/NetPhos.t
- t/Node.t
- t/OMIMentry.t
- t/OMIMentryAllelicVariant.t
- t/OMIMparser.t
- t/OddCodes.t
- t/Ontology.t
- t/OntologyEngine.t
- t/OntologyStore.t
- t/PAML.t
- t/Perl.t
- t/Phenotype.t
- t/PhylipDist.t
- t/PhysicalMap.t
- t/Pictogram.t
- t/PopGen.t
- t/PopGenSims.t
- t/PrimarySeq.t
- t/Primer.t
- t/Promoterwise.t
- t/ProtDist.t
- t/ProtMatrix.t
- t/ProtPsm.t
- t/Pseudowise.t
- t/QRNA.t
- t/RNAChange.t
- t/RandDistFunctions.t
- t/RandomTreeFactory.t
- t/Range.t
- t/RangeI.t
- t/RefSeq.t
- t/Registry.t
- t/Relationship.t
- t/RelationshipType.t
- t/RemoteBlast.t
- t/RepeatMasker.t
- t/RestrictionAnalysis.t
- t/RestrictionIO.t
- t/RootI.t
- t/RootIO.t
- t/RootStorable.t
- t/SNP.t
- t/Scansite.t
- t/SearchDist.t
- t/SearchIO.t
- t/Seg.t
- t/Seq.t
- t/SeqAnalysisParser.t
- t/SeqBuilder.t
- t/SeqDiff.t
- t/SeqFeatCollection.t
- t/SeqFeature.t
- t/SeqHound_DB.t
- t/SeqIO.t
- t/SeqPattern.t
- t/SeqStats.t
- t/SeqUtils.t
- t/SeqVersion.t
- t/SeqWords.t
- t/SequenceFamily.t
- t/Sigcleave.t
- t/Signalp.t
- t/Sim4.t
- t/SimilarityPair.t
- t/SimpleAlign.t
- t/SiteMatrix.t
- t/Sopma.t
- t/Species.t
- t/Spidey.t
- t/StandAloneBlast.t
- t/StructIO.t
- t/Structure.t
- t/Symbol.t
- t/TagHaplotype.t
- t/TaxonTree.t
- t/Taxonomy.t
- t/Tempfile.t
- t/Term.t
- t/Test.pm
- t/Tmhmm.t
- t/Tools.t
- t/Tree.t
- t/TreeBuild.t
- t/TreeIO.t
- t/UCSCParsers.t
- t/Unflattener.t
- t/Unflattener2.t
- t/UniGene.t
- t/Variation_IO.t
- t/WABA.t
- t/XEMBL_DB.t
- t/abi.t
- t/ace.t
- t/alignUtilities.t
- t/asciitree.t
- t/bsml_sax.t
- t/chaosxml.t
- t/cigarstring.t
- t/consed.t
- t/ctf.t
- t/data/1A11.pdb
- t/data/1A3I.pdb
- t/data/1BPT.pdb
- t/data/503384.MEGABLAST.0
- t/data/503384.MEGABLAST.2
- t/data/5X_1895.FASTXY
- t/data/8HVP.pdb
- t/data/AAC12660.fa
- t/data/AB077698.gb
- t/data/AE003528_ecoli.bls
- t/data/AE003644_Adh-genomic.gb
- t/data/AF032047.gbk
- t/data/AF165282.gb
- t/data/AHCYL1.kegg
- t/data/ATF14F8.gbk
- t/data/AY095303S1.gbk
- t/data/AY763288.gb
- t/data/AnnIX-v003.gbk
- t/data/BAB68554.gb
- t/data/BC000007.gbk
- t/data/BEL16-LTR_AG.embl
- t/data/BK000016-tpa.gbk
- t/data/BLOSUM50
- t/data/BN000066-tpa.embl
- t/data/Bird_Ovomucoids.nex
- t/data/D10483.gbk
- t/data/D12555.gbk
- t/data/DQ018368.gb
- t/data/ECAPAH02.embl
- t/data/GO.defs.test
- t/data/GO.defs.test2
- t/data/Genscan.FastA
- t/data/Glimmer2.out
- t/data/Glimmer3.detail
- t/data/Glimmer3.predict
- t/data/GlimmerHMM.out
- t/data/GlimmerM.out
- t/data/HUMBETGLOA.FASTA
- t/data/HUMBETGLOA.fa
- t/data/HUMBETGLOA.gff
- t/data/HUMBETGLOA.grail
- t/data/HUMBETGLOA.grailexp
- t/data/HUMBETGLOA.mzef
- t/data/HUMBETGLOA.tblastx
- t/data/Kingdoms_DNA.nex
- t/data/L77119.hmmer
- t/data/LL-sample.seq
- t/data/LOAD_Ccd1.dnd
- t/data/LittleChrY.dbsnp.xml
- t/data/M0.mlc
- t/data/MSGEFTUA.gb
- t/data/Mcjanrna_rdbII.gbk
- t/data/MmCT
- t/data/NC_001284.gbk
- t/data/NC_006346.gb
- t/data/NC_006511-short.gbk
- t/data/NM_002253.tseq
- t/data/NM_002254.gb
- t/data/NT_021877.gbk
- t/data/O_sat.wgs
- t/data/P33897
- t/data/PAM250
- t/data/Primate_mtDNA.nex
- t/data/Rab1.chaos-xml
- t/data/SPAN_Family4nl.nex
- t/data/SPAN_Family7n.nex
- t/data/SPAN_Family8a.nex
- t/data/SwissProt.dat
- t/data/T7.aln
- t/data/Treebase-chlamy-dna.nex
- t/data/U58726.gb
- t/data/U71225.gb
- t/data/U83300.bsml
- t/data/UnaSmithHIV-both.nex
- t/data/X98338_Adh-mRNA.gb
- t/data/a_thaliana.blastn
- t/data/aaml.mlc
- t/data/aaml_pairwise.mlc
- t/data/acefile.ace.1
- t/data/acefile.singlets
- t/data/adh.mb_tree.nexus
- t/data/alnfile.fasta
- t/data/amino.fa
- t/data/ar.embl
- t/data/atp1.matrix
- t/data/ay007676.gb
- t/data/ay116458.gb
- t/data/ay149291.gb
- t/data/barns-combined.nex
- t/data/baseml.pairwise
- t/data/baseml.usertree
- t/data/basic-bush.nex
- t/data/basic-ladder.nex
- t/data/biodbgff/test.gff
- t/data/biodbgff/test.gff3
- t/data/biofpc.cor
- t/data/biofpc.fpc
- t/data/biographics/feature_data.txt
- t/data/biographics/t1/version1.gif
- t/data/biographics/t1/version1.png
- t/data/biographics/t1/version2.gif
- t/data/biographics/t1/version2.png
- t/data/biographics/t1/version3.png
- t/data/biographics/t1/version4.png
- t/data/biographics/t1/version5.png
- t/data/biographics/t1/version6.png
- t/data/biographics/t1/version7.png
- t/data/biographics/t1/version8.png
- t/data/biographics/t2/version1.gif
- t/data/biographics/t2/version1.png
- t/data/biographics/t2/version10.png
- t/data/biographics/t2/version11.png
- t/data/biographics/t2/version12.png
- t/data/biographics/t2/version13.png
- t/data/biographics/t2/version14.png
- t/data/biographics/t2/version2.gif
- t/data/biographics/t2/version2.png
- t/data/biographics/t2/version3.png
- t/data/biographics/t2/version4.png
- t/data/biographics/t2/version5.png
- t/data/biographics/t2/version6.png
- t/data/biographics/t2/version7.png
- t/data/biographics/t2/version8.png
- t/data/biographics/t2/version9.png
- t/data/biographics/t3/version1.gif
- t/data/biographics/t3/version1.png
- t/data/biographics/t3/version2.gif
- t/data/biographics/t3/version2.png
- t/data/biographics/t3/version3.png
- t/data/biographics/t3/version4.png
- t/data/biographics/t3/version5.png
- t/data/biographics/t3/version6.png
- t/data/biographics/t3/version7.png
- t/data/bl2seq.blastn
- t/data/bl2seq.blastn.rev
- t/data/bl2seq.blastx.out
- t/data/bl2seq.bug940.out
- t/data/bl2seq.out
- t/data/bl2seq.tblastx.out
- t/data/blast.report
- t/data/blat.psLayout3
- t/data/blosum62.bla
- t/data/branchSite.mlc
- t/data/brassica_ATH.WUBLASTN
- t/data/bug2120.phd
- t/data/c200-vs-yeast.BLASTN
- t/data/c200-vs-yeast.BLASTN.m8
- t/data/calm.swiss
- t/data/catalase-webblast.BLASTP
- t/data/cds-266.fas
- t/data/chad100.scf
- t/data/char-interleave.nex
- t/data/char-matrix-spaces.nex
- t/data/codeml.mlc
- t/data/codeml315.mlc
- t/data/codeml_lysozyme/2NG.dN
- t/data/codeml_lysozyme/2NG.dS
- t/data/codeml_lysozyme/2NG.t
- t/data/codeml_lysozyme/4fold.nuc
- t/data/codeml_lysozyme/lnf
- t/data/codeml_lysozyme/lysozymeSmall.ctl
- t/data/codeml_lysozyme/lysozymeSmall.trees
- t/data/codeml_lysozyme/lysozymeSmall.txt
- t/data/codeml_lysozyme/mlc
- t/data/codeml_lysozyme/rst
- t/data/codeml_lysozyme/rst1
- t/data/codeml_lysozyme/rub
- t/data/codeml_nssites.mlc
- t/data/compLD_missingtest.prettybase
- t/data/compLD_test.prettybase
- t/data/component.ontology.test
- t/data/component.ontology.test2
- t/data/consed_project/edit_dir/test_project.contigs
- t/data/consed_project/edit_dir/test_project.fasta
- t/data/consed_project/edit_dir/test_project.fasta.log
- t/data/consed_project/edit_dir/test_project.fasta.screen
- t/data/consed_project/edit_dir/test_project.fasta.screen.ace.1
- t/data/consed_project/edit_dir/test_project.fasta.screen.ace.2
- t/data/consed_project/edit_dir/test_project.fasta.screen.contigs
- t/data/consed_project/edit_dir/test_project.fasta.screen.contigs.qual
- t/data/consed_project/edit_dir/test_project.fasta.screen.log
- t/data/consed_project/edit_dir/test_project.fasta.screen.problems
- t/data/consed_project/edit_dir/test_project.fasta.screen.problems.qual
- t/data/consed_project/edit_dir/test_project.fasta.screen.qual
- t/data/consed_project/edit_dir/test_project.fasta.screen.singlets
- t/data/consed_project/edit_dir/test_project.fasta.screen.view
- t/data/consed_project/edit_dir/test_project.newtags
- t/data/consed_project/edit_dir/test_project.phrap.out
- t/data/consed_project/edit_dir/test_project.screen.out
- t/data/consed_project/edit_dir/test_projectNewChromats.fof
- t/data/consed_project/edit_dir/test_project_to_alu.cross
- t/data/consed_project/phd_dir/ML4922R.phd.1
- t/data/consed_project/phd_dir/ML4924F.phd.1
- t/data/consed_project/phd_dir/ML4924R.phd.1
- t/data/consed_project/phd_dir/ML4947F.phd.1
- t/data/crab.dat.cn
- t/data/crab.nj
- t/data/crab.njb
- t/data/crypto.sim4-0
- t/data/crypto.sim4-3
- t/data/crypto.sim4-4
- t/data/ctgdemo.fpc
- t/data/cys1_dicdi.water
- t/data/cysprot.fa
- t/data/cysprot.msf
- t/data/cysprot.needle
- t/data/cysprot.tblastn
- t/data/cysprot.water
- t/data/cysprot1.FASTA
- t/data/cysprot1.fa
- t/data/cysprot1a.fa
- t/data/cysprot1a.msf
- t/data/cysprot1b.fa
- t/data/cysprot1b.hmmsearch
- t/data/cysprot1b.msf
- t/data/cysprot1b.newick
- t/data/cysprot_vs_gadfly.FASTA
- t/data/dbfa/1.fa
- t/data/dbfa/2.fa
- t/data/dbfa/3.fa
- t/data/dbfa/4.fa
- t/data/dbfa/5.fa
- t/data/dbfa/6.fa
- t/data/dbfa/7.fa
- t/data/directives.gff3
- t/data/dmel_2Lchunk.gb
- t/data/dna1.fa
- t/data/dna2.fa
- t/data/dnaE-bsub-prot.fa
- t/data/dnaE-bsub.fa
- t/data/dnaEbsub_ecoli.wublastx
- t/data/dnaEbsub_ecoli.wutblastn
- t/data/dnaEbsub_ecoli.wutblastx
- t/data/dq519393.gb
- t/data/ecoli-trna-qrna.out
- t/data/ecoli_domains.rps.xml
- t/data/ecoli_domains.rpsblast
- t/data/ecolitst.bls
- t/data/ecolitst.fa
- t/data/ecolitst.noseqs.wublastp
- t/data/ecolitst.wublastp
- t/data/empty.bl2seq
- t/data/entrezgene.dat
- t/data/example.hap
- t/data/example.phase
- t/data/expected.blast.out
- t/data/factor7.embl
- t/data/footprinter.out
- t/data/frac_problems.blast
- t/data/geneid_1.0.out
- t/data/genemark.out
- t/data/genewise.out
- t/data/genewise_output.paracel_btk
- t/data/genomewise.out
- t/data/genomic-seq.epcr
- t/data/genomic-seq.fasta
- t/data/genomic-seq.genscan
- t/data/genomic-seq.mzef
- t/data/gf-s71.needle
- t/data/glimmer.out
- t/data/hemoglobinA.meg
- t/data/hg16_chroms.gff
- t/data/hmmpfam.out
- t/data/hmmpfam_fake.out
- t/data/hmmsearch.out
- t/data/hs_est.est2genome
- t/data/hs_fugu.newick
- t/data/hs_owlmonkey.aln
- t/data/hs_owlmonkey.fas
- t/data/hs_owlmonkey.fasta
- t/data/hsinsulin.blastcl3.blastn
- t/data/humor.maf
- t/data/humts1.pal
- t/data/hybrid1.gff3
- t/data/hybrid2.gff3
- t/data/insulin.water
- t/data/interpro_ebi.xml
- t/data/interpro_short.xml
- t/data/intrablock-comment.nex
- t/data/kinases.tsv
- t/data/kinases.xls
- t/data/knownGene.gff3
- t/data/little.largemultifasta
- t/data/long-names.nex
- t/data/lucy.info
- t/data/lucy.qual
- t/data/lucy.seq
- t/data/lucy.stderr
- t/data/lysozyme6.protml
- t/data/lysozyme6.simple.protml
- t/data/mapmaker.out
- t/data/mapmaker.txt
- t/data/mast.dat
- t/data/masta.dat
- t/data/megablast_output.paracel_btk
- t/data/meme.dat
- t/data/mini-AE001405.gb
- t/data/mini-align.aln
- t/data/mixedmast.dat
- t/data/mpath.ontology.test
- t/data/multi_1.fa
- t/data/multi_2.fa
- t/data/multi_blast.bls
- t/data/multifa.seq
- t/data/multifa.seq.qual
- t/data/multiline-intrablock-comment.nex
- t/data/multiseq.bls
- t/data/mus.bls.xml
- t/data/mutations.dat
- t/data/mutations.old.dat
- t/data/mutations.old.xml
- t/data/mutations.xml
- t/data/myco_sites.gff
- t/data/nei_gojobori_test.aln
- t/data/neighbor.dist
- t/data/new_blastn.txt
- t/data/newformat.swiss
- t/data/no-genes.genscan
- t/data/no_FH.embl
- t/data/no_cds_example.gb
- t/data/no_hsps.blastp
- t/data/noninterleaved.phy
- t/data/omim_genemap_test
- t/data/omim_text_test
- t/data/pep-266.aln
- t/data/pfam_tests.stk
- t/data/phi.out
- t/data/phipsi.out
- t/data/phredfile.phd
- t/data/phylipdist-36.out
- t/data/phylipdist.out
- t/data/pictogram.fa
- t/data/plague_yeast.bls.xml
- t/data/polymorphism.dat
- t/data/polymorphism.old.xml
- t/data/polymorphism.xml
- t/data/popgen_saureus.dat
- t/data/popgen_saureus.multidat
- t/data/popstats.prettybase
- t/data/pre_rel9.swiss
- t/data/primedseq.fa
- t/data/primer3_infile.txt
- t/data/primer3_outfile.txt
- t/data/primer3_output.txt
- t/data/prints.out
- t/data/promoterwise.out
- t/data/protpars.phy
- t/data/pseudowise.out
- t/data/psi_xml.dat
- t/data/psiblastreport.out
- t/data/puzzle.tre
- t/data/qrna-relloc.out
- t/data/qualfile.qual
- t/data/quoted-strings1.nex
- t/data/quoted-strings2.nex
- t/data/radical-whitespace.nex
- t/data/radical-whitespace_02.nex
- t/data/readtest.abi
- t/data/readtest.ctf
- t/data/readtest.exp
- t/data/readtest.pln
- t/data/readtest.ztr
- t/data/rebase.itype2
- t/data/rebase.withrefm
- t/data/registry/bdb/seqdatabase.ini
- t/data/registry/flat/seqdatabase.ini
- t/data/rel9.swiss
- t/data/repeatmasker.fa.out
- t/data/revcomp_mrna.gb
- t/data/rfam_tests.stk
- t/data/roa1.dat
- t/data/roa1.genbank
- t/data/roa1.swiss
- t/data/roa1_v2.dat
- t/data/sbay_c545-yeast.BLASTZ.PSL
- t/data/seg.out
- t/data/seqdatabase.ini
- t/data/seqfeaturedb/test.gff3
- t/data/seqfile.pir
- t/data/seqs.fas
- t/data/sequencefamily.dat
- t/data/short.blx
- t/data/signalp.negative.out
- t/data/signalp.positive.out
- t/data/sim4.for.for
- t/data/sim4.for.rev
- t/data/sim4.rev
- t/data/singleNSsite.mlc
- t/data/so.obo
- t/data/sofa.ontology
- t/data/sparsealn.needle
- t/data/spidey.noalignment
- t/data/spidey.test1
- t/data/sprintf.rnamotif
- t/data/ssp160.embl.1
- t/data/stress_test_medline.xml
- t/data/stress_test_pubmed.xml
- t/data/sv40_small.xml
- t/data/swiss.dat
- t/data/swisspfam.data
- t/data/tab1part.mif
- t/data/tab2part.mif
- t/data/tab3part.mif
- t/data/taxdump/names.dmp
- t/data/taxdump/nodes.dmp
- t/data/tblastn.out
- t/data/test.ace
- t/data/test.embl
- t/data/test.embl2sq
- t/data/test.fasta
- t/data/test.game
- t/data/test.gcg
- t/data/test.gcgblast
- t/data/test.gcgfasta
- t/data/test.genbank
- t/data/test.genbank.noseq
- t/data/test.interpro
- t/data/test.lasergene
- t/data/test.mase
- t/data/test.meme
- t/data/test.meme2
- t/data/test.metafasta
- t/data/test.nh
- t/data/test.nhx
- t/data/test.pfam
- t/data/test.pir
- t/data/test.ptt
- t/data/test.raw
- t/data/test.swiss
- t/data/test.tab
- t/data/test.tigrxml
- t/data/test.txt
- t/data/test.waba
- t/data/test_badlf.gcg
- t/data/testaln.aln
- t/data/testaln.fasta
- t/data/testaln.mase
- t/data/testaln.metafasta
- t/data/testaln.msf
- t/data/testaln.nexus
- t/data/testaln.pfam
- t/data/testaln.phylip
- t/data/testaln.po
- t/data/testaln.prodom
- t/data/testaln.psi
- t/data/testaln.selex
- t/data/testaln.stockholm
- t/data/testaln2.fasta
- t/data/testdat.exonerate
- t/data/testdbaccnums.out
- t/data/testfile.erpin
- t/data/testfuzzy.genbank
- t/data/tmhmm.out
- t/data/transfac.dat
- t/data/tree_nonewline.nexus
- t/data/tricky.wublast
- t/data/trna.strict.rnamotif
- t/data/unigene.data
- t/data/urease.tre.nexus
- t/data/version2.scf
- t/data/version3.scf
- t/data/worm_fam_2785.cdna
- t/data/yeast.tRNAscanSE
- t/data/yn00.mlc
- t/ePCR.t
- t/embl.t
- t/entrezgene.t
- t/est2genome.t
- t/exp.t
- t/fasta.t
- t/flat.t
- t/game.t
- t/gcg.t
- t/genbank.t
- t/hmmer.t
- t/hmmer_pull.t
- t/interpro.t
- t/kegg.t
- t/largefasta.t
- t/largepseq.t
- t/lasergene.t
- t/lib/Error.pm
- t/lib/Test/Builder.pm
- t/lib/Test/Builder/Module.pm
- t/lib/Test/Builder/Tester.pm
- t/lib/Test/Builder/Tester/Color.pm
- t/lib/Test/More.pm
- t/lib/Test/Simple.pm
- t/lib/Test/Tutorial.pod
- t/lucy.t
- t/masta.t
- t/metafasta.t
- t/multiple_fasta.t
- t/obo_parser.t
- t/pICalculator.t
- t/phd.t
- t/pir.t
- t/pln.t
- t/primaryqual.t
- t/primedseq.t
- t/primer3.t
- t/protgraph.t
- t/psm.t
- t/qual.t
- t/raw.t
- t/rnamotif.t
- t/scf.t
- t/seq_quality.t
- t/seqfeaturePrimer.t
- t/seqread_fail.t
- t/sequencetrace.t
- t/seqwithquality.t
- t/simpleGOparser.t
- t/singlet.t
- t/sirna.t
- t/splicedseq.t
- t/swiss.t
- t/tRNAscanSE.t
- t/tab.t
- t/table.t
- t/testformats.pl
- t/tigrxml.t
- t/tinyseq.t
- t/trim.t
- t/ztr.t
