bioperl-db 1.5.2_005-RC

Released by
SENDU
Version
Release Date
2006-11-24
Kwalitee
134.38
Core Kwalitee
90.62
LINKS

Errors

no_unauthorized_packages
  • Bio::BioEntry
  • Bio::DB::BioDB
  • Bio::DB::BioSQL::AnnotationCollectionAdaptor
  • Bio::DB::BioSQL::BaseDriver
  • Bio::DB::BioSQL::BasePersistenceAdaptor
  • Bio::DB::BioSQL::BioNamespaceAdaptor
  • Bio::DB::BioSQL::BiosequenceAdaptor
  • Bio::DB::BioSQL::ClusterAdaptor
  • Bio::DB::BioSQL::CommentAdaptor
  • Bio::DB::BioSQL::DBAdaptor
  • Bio::DB::BioSQL::DBLinkAdaptor
  • Bio::DB::BioSQL::LocationAdaptor
  • Bio::DB::BioSQL::MultiDB
  • Bio::DB::BioSQL::OBDA
  • Bio::DB::BioSQL::OntologyAdaptor
  • Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver
  • Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver
  • Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver
  • Bio::DB::BioSQL::Oracle::PathAdaptorDriver
  • Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver
  • Bio::DB::BioSQL::Oracle::TermAdaptorDriver
  • Bio::DB::BioSQL::PathAdaptor
  • Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver
  • Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver
  • Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver
  • Bio::DB::BioSQL::Pg::PathAdaptorDriver
  • Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver
  • Bio::DB::BioSQL::Pg::TermAdaptorDriver
  • Bio::DB::BioSQL::PrimarySeqAdaptor
  • Bio::DB::BioSQL::ReferenceAdaptor
  • Bio::DB::BioSQL::RelationshipAdaptor
  • Bio::DB::BioSQL::SeqAdaptor
  • Bio::DB::BioSQL::SeqFeatureAdaptor
  • Bio::DB::BioSQL::SimpleValueAdaptor
  • Bio::DB::BioSQL::SpeciesAdaptor
  • Bio::DB::BioSQL::TermAdaptor
  • Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver
  • Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver
  • Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver
  • Bio::DB::BioSQL::mysql::PathAdaptorDriver
  • Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver
  • Bio::DB::BioSQL::mysql::TermAdaptorDriver
  • Bio::DB::CacheServer::SeqDB
  • Bio::DB::DBAdaptorI
  • Bio::DB::DBContextI
  • Bio::DB::DBD
  • Bio::DB::DBI
  • Bio::DB::DBI::Oracle
  • Bio::DB::DBI::Pg
  • Bio::DB::DBI::Transaction
  • Bio::DB::DBI::TransactionListener
  • Bio::DB::DBI::base
  • Bio::DB::DBI::mysql
  • Bio::DB::EasyArgv
  • Bio::DB::PersistenceAdaptorI
  • Bio::DB::Persistent::BioNamespace
  • Bio::DB::Persistent::ObjectRellMapperI
  • Bio::DB::Persistent::PersistentObject
  • Bio::DB::Persistent::PersistentObjectFactory
  • Bio::DB::Persistent::PrimarySeq
  • Bio::DB::Persistent::Seq
  • Bio::DB::Persistent::SeqFeature
  • Bio::DB::PersistentObjectI
  • Bio::DB::Query::AbstractQuery
  • Bio::DB::Query::BioQuery
  • Bio::DB::Query::DBQueryResult
  • Bio::DB::Query::PrebuiltResult
  • Bio::DB::Query::QueryConstraint
  • Bio::DB::Query::QueryResultI
  • Bio::DB::Query::SqlGenerator
  • Bio::DB::Query::SqlQuery
  • Bio::DB::SimpleDBContext
prereq_matches_use
  • Bio::Cluster::ClusterFactory
  • Bio::Cluster::UniGene
  • DBD::Oracle
proper_libs
Bio/BioEntry.pm, Bio/DB/BioDB.pm, Bio/DB/BioSQL/AnnotationCollectionAdaptor.pm, Bio/DB/BioSQL/BaseDriver.pm, Bio/DB/BioSQL/BasePersistenceAdaptor.pm, Bio/DB/BioSQL/BioNamespaceAdaptor.pm, Bio/DB/BioSQL/BiosequenceAdaptor.pm, Bio/DB/BioSQL/ClusterAdaptor.pm, Bio/DB/BioSQL/CommentAdaptor.pm, Bio/DB/BioSQL/DBAdaptor.pm, Bio/DB/BioSQL/DBLinkAdaptor.pm, Bio/DB/BioSQL/LocationAdaptor.pm, Bio/DB/BioSQL/MultiDB.pm, Bio/DB/BioSQL/OBDA.pm, Bio/DB/BioSQL/OntologyAdaptor.pm, Bio/DB/BioSQL/Oracle/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/PathAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/Oracle/TermAdaptorDriver.pm, Bio/DB/BioSQL/PathAdaptor.pm, Bio/DB/BioSQL/Pg/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/Pg/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/Pg/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/Pg/PathAdaptorDriver.pm, Bio/DB/BioSQL/Pg/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/Pg/TermAdaptorDriver.pm, Bio/DB/BioSQL/PrimarySeqAdaptor.pm, Bio/DB/BioSQL/ReferenceAdaptor.pm, Bio/DB/BioSQL/RelationshipAdaptor.pm, Bio/DB/BioSQL/SeqAdaptor.pm, Bio/DB/BioSQL/SeqFeatureAdaptor.pm, Bio/DB/BioSQL/SimpleValueAdaptor.pm, Bio/DB/BioSQL/SpeciesAdaptor.pm, Bio/DB/BioSQL/TermAdaptor.pm, Bio/DB/BioSQL/mysql/AnnotationCollectionAdaptorDriver.pm, Bio/DB/BioSQL/mysql/BasePersistenceAdaptorDriver.pm, Bio/DB/BioSQL/mysql/BiosequenceAdaptorDriver.pm, Bio/DB/BioSQL/mysql/PathAdaptorDriver.pm, Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm, Bio/DB/BioSQL/mysql/TermAdaptorDriver.pm, Bio/DB/CacheServer/SeqDB.pm, Bio/DB/DBAdaptorI.pm, Bio/DB/DBContextI.pm, Bio/DB/DBD.pm, Bio/DB/DBI.pm, Bio/DB/DBI/Oracle.pm, Bio/DB/DBI/Pg.pm, Bio/DB/DBI/Transaction.pm, Bio/DB/DBI/TransactionListener.pm, Bio/DB/DBI/base.pm, Bio/DB/DBI/mysql.pm, Bio/DB/EasyArgv.pm, Bio/DB/PersistenceAdaptorI.pm, Bio/DB/Persistent/BioNamespace.pm, Bio/DB/Persistent/ObjectRelMapperI.pm, Bio/DB/Persistent/PersistentObject.pm, Bio/DB/Persistent/PersistentObjectFactory.pm, Bio/DB/Persistent/PrimarySeq.pm, Bio/DB/Persistent/Seq.pm, Bio/DB/Persistent/SeqFeature.pm, Bio/DB/PersistentObjectI.pm, Bio/DB/Query/AbstractQuery.pm, Bio/DB/Query/BioQuery.pm, Bio/DB/Query/DBQueryResult.pm, Bio/DB/Query/PrebuiltResult.pm, Bio/DB/Query/QueryConstraint.pm, Bio/DB/Query/QueryResultI.pm, Bio/DB/Query/SqlGenerator.pm, Bio/DB/Query/SqlQuery.pm, Bio/DB/SimpleDBContext.pm
test_prereq_matches_use
  • Bio::ClusterIO
use_warnings
Bio::BioEntry, Bio::DB::BioDB, Bio::DB::BioSQL::AnnotationCollectionAdaptor, Bio::DB::BioSQL::BaseDriver, Bio::DB::BioSQL::BasePersistenceAdaptor, Bio::DB::BioSQL::BioNamespaceAdaptor, Bio::DB::BioSQL::BiosequenceAdaptor, Bio::DB::BioSQL::ClusterAdaptor, Bio::DB::BioSQL::CommentAdaptor, Bio::DB::BioSQL::DBAdaptor, Bio::DB::BioSQL::DBLinkAdaptor, Bio::DB::BioSQL::LocationAdaptor, Bio::DB::BioSQL::MultiDB, Bio::DB::BioSQL::OBDA, Bio::DB::BioSQL::OntologyAdaptor, Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Oracle::PathAdaptorDriver, Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver, Bio::DB::BioSQL::Oracle::TermAdaptorDriver, Bio::DB::BioSQL::PathAdaptor, Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Pg::PathAdaptorDriver, Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver, Bio::DB::BioSQL::Pg::TermAdaptorDriver, Bio::DB::BioSQL::PrimarySeqAdaptor, Bio::DB::BioSQL::ReferenceAdaptor, Bio::DB::BioSQL::RelationshipAdaptor, Bio::DB::BioSQL::SeqAdaptor, Bio::DB::BioSQL::SeqFeatureAdaptor, Bio::DB::BioSQL::SimpleValueAdaptor, Bio::DB::BioSQL::SpeciesAdaptor, Bio::DB::BioSQL::TermAdaptor, Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver, Bio::DB::BioSQL::mysql::PathAdaptorDriver, Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver, Bio::DB::BioSQL::mysql::TermAdaptorDriver, Bio::DB::CacheServer::SeqDB, Bio::DB::DBAdaptorI, Bio::DB::DBContextI, Bio::DB::DBD, Bio::DB::DBI, Bio::DB::DBI::Oracle, Bio::DB::DBI::Pg, Bio::DB::DBI::Transaction, Bio::DB::DBI::TransactionListener, Bio::DB::DBI::base, Bio::DB::DBI::mysql, Bio::DB::EasyArgv, Bio::DB::PersistenceAdaptorI, Bio::DB::Persistent::BioNamespace, Bio::DB::Persistent::PersistentObject, Bio::DB::Persistent::PersistentObjectFactory, Bio::DB::Persistent::PrimarySeq, Bio::DB::Persistent::Seq, Bio::DB::Persistent::SeqFeature, Bio::DB::PersistentObjectI, Bio::DB::Query::AbstractQuery, Bio::DB::Query::BioQuery, Bio::DB::Query::DBQueryResult, Bio::DB::Query::PrebuiltResult, Bio::DB::Query::QueryConstraint, Bio::DB::Query::QueryResultI, Bio::DB::Query::SqlGenerator, Bio::DB::Query::SqlQuery, Bio::DB::SimpleDBContext