Kwalitee Issues

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: App::SimulateReads, App::SimulateReads::CLI, App::SimulateReads::CLI::App, App::SimulateReads::CLI::Command, App::SimulateReads::Command::Custom, App::SimulateReads::Command::Expression, App::SimulateReads::Command::Expression::Add, App::SimulateReads::Command::Expression::Remove, App::SimulateReads::Command::Expression::Restore, App::SimulateReads::Command::Genome, App::SimulateReads::Command::Quality, App::SimulateReads::Command::Quality::Add, App::SimulateReads::Command::Quality::Remove, App::SimulateReads::Command::Quality::Restore, App::SimulateReads::Command::Transcriptome, App::SimulateReads::DB, App::SimulateReads::DB::Handle::Expression, App::SimulateReads::DB::Handle::Quality, App::SimulateReads::Fastq, App::SimulateReads::Fastq::PairedEnd, App::SimulateReads::Fastq::SingleEnd, App::SimulateReads::InterlaceProcesses, App::SimulateReads::Quality, App::SimulateReads::Read, App::SimulateReads::Read::PairedEnd, App::SimulateReads::Read::SingleEnd, App::SimulateReads::Role::Digest, App::SimulateReads::Role::IO, App::SimulateReads::Role::ParseArgv, App::SimulateReads::Role::RunTimeTemplate, App::SimulateReads::Simulator, App::SimulateReads::WeightedRaffle

use_warnings

Add 'use warnings' (or its equivalents) to all modules (this will require perl > 5.6), or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: App::SimulateReads, App::SimulateReads::CLI, App::SimulateReads::CLI::App, App::SimulateReads::CLI::Command, App::SimulateReads::Command::Custom, App::SimulateReads::Command::Expression, App::SimulateReads::Command::Expression::Add, App::SimulateReads::Command::Expression::Remove, App::SimulateReads::Command::Expression::Restore, App::SimulateReads::Command::Genome, App::SimulateReads::Command::Quality, App::SimulateReads::Command::Quality::Add, App::SimulateReads::Command::Quality::Remove, App::SimulateReads::Command::Quality::Restore, App::SimulateReads::Command::Transcriptome, App::SimulateReads::DB, App::SimulateReads::DB::Handle::Expression, App::SimulateReads::DB::Handle::Quality, App::SimulateReads::Fastq, App::SimulateReads::Fastq::PairedEnd, App::SimulateReads::Fastq::SingleEnd, App::SimulateReads::InterlaceProcesses, App::SimulateReads::Quality, App::SimulateReads::Read, App::SimulateReads::Read::PairedEnd, App::SimulateReads::Read::SingleEnd, App::SimulateReads::Role::Digest, App::SimulateReads::Role::IO, App::SimulateReads::Role::ParseArgv, App::SimulateReads::Role::RunTimeTemplate, App::SimulateReads::Simulator, App::SimulateReads::WeightedRaffle

build_prereq_matches_use

List all modules used in the test suite in META.yml build_requires

Error:

  • Test::Pod

meta_yml_has_provides

Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.

Modules

Name Abstract Version View
App::SimulateReads App builder that simulates single-end and paired-end reads. 0.16 metacpan
App::SimulateReads::Base Policy and base module to App::SimulateReads project. 0.16 metacpan
App::SimulateReads::CLI Base class for command line interface. 0.16 metacpan
App::SimulateReads::CLI::App App::SimulateReads::CLI subclass for command line application interface. 0.16 metacpan
App::SimulateReads::CLI::Command App::SimulateReads::CLI subclass for commands interface 0.16 metacpan
App::SimulateReads::Command::Custom simulate command class. Simulate a custom sequencing 0.16 metacpan
App::SimulateReads::Command::Expression expression command class. Manage expression-matrix database. 0.16 metacpan
App::SimulateReads::Command::Expression::Add expression subcommand class. Add an expression-matrix to the database. 0.16 metacpan
App::SimulateReads::Command::Expression::Remove expression subcommand class. Remove an expression-matrix from database. 0.16 metacpan
App::SimulateReads::Command::Expression::Restore expression subcommand class. Restore database. 0.16 metacpan
App::SimulateReads::Command::Genome simulate command class. Simulate genome sequencing 0.16 metacpan
App::SimulateReads::Command::Quality quality command class. Manage quality profile database. 0.16 metacpan
App::SimulateReads::Command::Quality::Add quality subcommand class. Add a quality profile to the database. 0.16 metacpan
App::SimulateReads::Command::Quality::Remove quality subcommand class. Remove a quality profile from database. 0.16 metacpan
App::SimulateReads::Command::Quality::Restore quality subcommand class. Restore database. 0.16 metacpan
App::SimulateReads::Command::Transcriptome simulate command class. Simulate transcriptome sequencing 0.16 metacpan
App::SimulateReads::DB Singleton class to manage database 0.16 metacpan
App::SimulateReads::DB::Handle::Expression Class to handle expression-matrix database schemas. 0.16 metacpan
App::SimulateReads::DB::Handle::Quality Class to handle quality database schemas. 0.16 metacpan
App::SimulateReads::DB::Schema metacpan
App::SimulateReads::DB::Schema::Result::ExpressionMatrix metacpan
App::SimulateReads::DB::Schema::Result::QualityProfile metacpan
App::SimulateReads::Fastq Base class to simulate fastq entries 0.16 metacpan
App::SimulateReads::Fastq::PairedEnd App::SimulateReads::Fastq subclass for simulate paired-end fastq entries. 0.16 metacpan
App::SimulateReads::Fastq::SingleEnd App::SimulateReads::Fastq subclass for simulate single-end fastq entries. 0.16 metacpan
App::SimulateReads::InterlaceProcesses Interlaces the processe id for differents processes, actually for parent, child processes. 0.16 metacpan
App::SimulateReads::Quality Class to simulate quality entries 0.16 metacpan
App::SimulateReads::Read Base class to simulate reads 0.16 metacpan
App::SimulateReads::Read::PairedEnd App::SimulateReads::Read subclass for simulate paired-end reads. 0.16 metacpan
App::SimulateReads::Read::SingleEnd App::SimulateReads::Read subclass for simulate single-end reads. 0.16 metacpan
App::SimulateReads::Role::Digest Wrapper on Simulator class for genome/transcriptome sequencing 0.16 metacpan
App::SimulateReads::Role::IO Input and output custom wrappers. 0.16 metacpan
App::SimulateReads::Role::ParseArgv Getopt::Long wrapper. 0.16 metacpan
App::SimulateReads::Role::RunTimeTemplate Extends class with runtime printf like function 0.16 metacpan
App::SimulateReads::Simulator Class responsible to make the simulation 0.16 metacpan
App::SimulateReads::Types Moose type constraints for App::SimulateReads project 0.16 metacpan
App::SimulateReads::WeightedRaffle Weighted raffle interface. 0.16 metacpan

Other Files

Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README.md metacpan
dist.ini metacpan