Kwalitee Issues

package_version_matches_dist_version

Fix the version(s).

valid_signature

Sign the dist as the last step before creating the archive. Take care not to modify/regenerate dist meta files or the manifest.

Error: gpgkeys: key F1BAA590112EBE05 not found on keyserver gpg: Signature made Tue Nov 2 20:58:59 2010 JST using RSA key ID 112EBE05 gpg: requesting key 112EBE05 from hkp server pool.sks-keyservers.net gpg: no valid OpenPGP data found. gpg: Can't check signature: public key not found ==> BAD/TAMPERED signature detected! <==

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 687,688

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

no_unauthorized_packages

Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.

Error:

  • Bio::Das::ProServer::Config
  • Bio::Das::ProServer::SourceAdaptor
  • Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio
  • Bio::Das::ProServer::SourceAdaptor::Transport::dbi
  • Bio::Das::ProServer::SourceAdaptor::Transport::file
  • Bio::Das::ProServer::SourceAdaptor::Transport::generic
  • Bio::Das::ProServer::SourceAdaptor::Transport::getz
  • Bio::Das::ProServer::SourceAdaptor::Transport::oracle
  • Bio::Das::ProServer::SourceAdaptor::Transport::wgetz
  • Bio::Das::ProServer::SourceAdaptor::bioseq
  • Bio::Das::ProServer::SourceAdaptor::simple

has_separate_license_file

This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

meta_yml_has_repository_resource

Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).

Modules

Name Abstract Version View
Bio::Das::ProServer 687 metacpan
Bio::Das::ProServer::Authenticator authenticates DAS requests 688 metacpan
Bio::Das::ProServer::Authenticator::http authenticates DAS requests by issuing requests to a remote authority 688 metacpan
Bio::Das::ProServer::Authenticator::ip authenticates DAS requests by IP address 688 metacpan
Bio::Das::ProServer::Config configuration parsing and hooks 687 metacpan
Bio::Das::ProServer::SourceAdaptor base class for sources 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::bed12 DBI-like access to a BED file 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio A ProServer transport module that works off any flat file that Bio::SeqIO supports. 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::csv Comma-separated-values transport layer 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::dbi A DBI transport layer (actually customised for MySQL) 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::ensembl 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::file 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::generic A generic transport layer for deriving others from 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::getz Pulls features over command-line SRS/getz transport 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::martservice BioMart MartService Transport 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::oracle Oracle/DBI transport layer 687 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::sif 688 metacpan
Bio::Das::ProServer::SourceAdaptor::Transport::wgetz A ProServer transport module for wgetz (SRS web access) 687 metacpan
Bio::Das::ProServer::SourceAdaptor::all_in_group 687 metacpan
Bio::Das::ProServer::SourceAdaptor::bed12 688 metacpan
Bio::Das::ProServer::SourceAdaptor::bioseq A ProServer source adaptor for converting Bio::Seq objects into DAS features. See also "Transport/bioseqio.pm". 687 metacpan
Bio::Das::ProServer::SourceAdaptor::file adaptor for file-based DAS sources 0 metacpan
Bio::Das::ProServer::SourceAdaptor::grouped_db 687 metacpan
Bio::Das::ProServer::SourceAdaptor::proxy 687 metacpan
Bio::Das::ProServer::SourceAdaptor::sif 688 metacpan
Bio::Das::ProServer::SourceAdaptor::simple 687 metacpan
Bio::Das::ProServer::SourceAdaptor::simple_interaction 688 metacpan
Bio::Das::ProServer::SourceAdaptor::simple_volmap 688 metacpan
Bio::Das::ProServer::SourceAdaptor::simpledb Builds simple DAS features from a database 687 metacpan
Bio::Das::ProServer::SourceAdaptor::styletest 687 metacpan
Bio::Das::ProServer::SourceHydra A runtime factory for B::D::P::SourceAdaptors 687 metacpan
Bio::Das::ProServer::SourceHydra::dbi A database-backed implementation of B::D::P::SourceHydra 687 metacpan
Bio::Das::ProServer::SourceHydra::sql A database-backed implementation of B::D::P::SourceHydra 687 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan