Files

• Build.PL
• Changes
• LICENSE
• MANIFEST
• META.yml
• README
• bin/bgrs-notify.pl
• bin/cat.pl
• bin/cat_by_regex.pl
• bin/cl_muscle_example.pl
• bin/distribution
• bin/dummy_worker.pl
• bin/jclone
• bin/log2debug.pl
• bin/mail.pl
• bin/mail.sh
• bin/qfake.pl
• bin/qfork.pl
• bin/qstat-jwb
• bin/qstat-tsv
• bin/qtime
• bin/qtime-dist
• bin/rmrex
• bin/rocksblast
• bin/test_sendmail.pl
• config_examples/_comp_bio_cluster.config
• config_examples/blast_all-vs-all.conf
• dist.ini
• idx/test.0.idx
• job.yml
• lib/Bio/Grid/Run/SGE.pm
• lib/Bio/Grid/Run/SGE/ClusterScript.pod
• lib/Bio/Grid/Run/SGE/Config.pod
• lib/Bio/Grid/Run/SGE/Index.pm
• lib/Bio/Grid/Run/SGE/Index/Dummy.pm
• lib/Bio/Grid/Run/SGE/Index/FileList.pm
• lib/Bio/Grid/Run/SGE/Index/FileRecordsFromNDJSON.pm
• lib/Bio/Grid/Run/SGE/Index/General.pm
• lib/Bio/Grid/Run/SGE/Index/GroupedTable.pm
• lib/Bio/Grid/Run/SGE/Index/List.pm
• lib/Bio/Grid/Run/SGE/Index/ListFromFile.pm
• lib/Bio/Grid/Run/SGE/Index/NDJSON.pm
• lib/Bio/Grid/Run/SGE/Index/Range.pm
• lib/Bio/Grid/Run/SGE/Index/RunOnce.pm
• lib/Bio/Grid/Run/SGE/Iterator.pm
• lib/Bio/Grid/Run/SGE/Iterator/AllvsAll.pm
• lib/Bio/Grid/Run/SGE/Iterator/AllvsAllNoRep.pm
• lib/Bio/Grid/Run/SGE/Iterator/AvsB.pm
• lib/Bio/Grid/Run/SGE/Iterator/Consecutive.pm
• lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
• lib/Bio/Grid/Run/SGE/Iterator/List.pm
• lib/Bio/Grid/Run/SGE/Iterator/None.pm
• lib/Bio/Grid/Run/SGE/Job.pm
• lib/Bio/Grid/Run/SGE/Log/Analysis.pm
• lib/Bio/Grid/Run/SGE/Log/Notify.pod
• lib/Bio/Grid/Run/SGE/Log/Notify/Jabber.pm
• lib/Bio/Grid/Run/SGE/Log/Notify/Mail.pm
• lib/Bio/Grid/Run/SGE/Log/Worker.pm
• lib/Bio/Grid/Run/SGE/Master.pm
• lib/Bio/Grid/Run/SGE/Role/Indexable.pm
• lib/Bio/Grid/Run/SGE/Role/Iterable.pm
• lib/Bio/Grid/Run/SGE/Util.pm
• lib/Bio/Grid/Run/SGE/Util/Blast.pm
• lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
• lib/Bio/Grid/Run/SGE/Worker.pm
• lib/FindBinNew.pm
• misc/Makefile
• misc/Mtest.pm
• misc/bio-sge-combine-allvsall-norep.pl
• misc/test.pl
• misc/testenv.conf.yml
• perf/test.pl
• scripts/cl_blast-existing-db.pl
• scripts/cl_blast_all-vs-all
• scripts/cl_dummy.pl
• scripts/cl_env.pl
• scripts/cl_exonerate.pl
• scripts/cl_fail_on_purpose.pl
• scripts/cl_gmap.pl
• scripts/cl_gzip.pl
• scripts/cl_iprscan.pl
• scripts/cl_muscle.pl
• scripts/cl_phylip-protdist.pl
• scripts/cl_phyml.pl
• scripts/cl_psipred.pl
• scripts/cl_run_single.pl
• scripts/cl_seqtk.conf.yml.example
• scripts/cl_seqtk.pl
• scripts/cl_syntax_error.pl
• scripts/env.qsub.sh
• scripts/record_qsub_env.pl
• t/00-basic_qfake.t
• t/00-basic_qfake_err.t
• t/00-basic_qfake_syntax_error.t
• t/00-basic_qfork.t
• t/00-load.t
• t/Bio-Grid-Run-SGE-Index-Dummy.t
• t/Bio-Grid-Run-SGE-Index-FileList.t
• t/Bio-Grid-Run-SGE-Index-FileRecordsFromNDJSON.t
• t/Bio-Grid-Run-SGE-Index-General.t
• t/Bio-Grid-Run-SGE-Index-List.t
• t/Bio-Grid-Run-SGE-Index-ListFromFile.t
• t/Bio-Grid-Run-SGE-Index-NDJSON.t
• t/Bio-Grid-Run-SGE-Index-Range.t
• t/Bio-Grid-Run-SGE-Index.t
• t/Bio-Grid-Run-SGE-Iterator-AllvsAllNoRep.t
• t/Bio-Grid-Run-SGE-Iterator-AvsB.t
• t/Bio-Grid-Run-SGE-Iterator-Consecutive.t
• t/Bio-Grid-Run-SGE-Log-Analysis.t
• t/Bio-Grid-Run-SGE-Master.qsub.pl
• t/Bio-Grid-Run-SGE-Master.script.perf.pl
• t/Bio-Grid-Run-SGE-Master.script.pl
• t/Bio-Grid-Run-SGE-Master.t
• t/Bio-Grid-Run-SGE-Role-Iterable.t
• t/Bio-Grid-Run-SGE-Util-Blast.t
• t/Bio-Grid-Run-SGE-Util.t
• t/Bio-Grid-Run-SGE-Worker.t
• t/Bio-Grid-Run-SGE.t
• t/boilerplate.t
• t/data/Bio-Grid-Run-SGE-Consecutive.range-1-5-3.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-1-2.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-44-44-0.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-44-44-1.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.nosep.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.nosep.skipfirst.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-45-47-2.ref.fa
• t/data/Bio-Grid-Run-SGE-Index-General.range-chunky-0-2.ref.fa
• t/data/Bio-Grid-Run-SGE-Master_run.yml
• t/data/S_lycopersicum_chromosomes.2.40.fa.bg.gz.fai
• t/data/S_lycopersicum_contigs.2.40.fa.bg.gz.fai
• t/data/S_lycopersicum_scaffolds.2.40.fa.bg.gz.fai
• t/data/test.fa
• t/data/test.ndjson
• t/lib/Test/Util.pm
• t/manifest.t
• t/pod-coverage.t
• t/pod.t
• t/testrun/Makefile
• t/testrun/cl_dummy.pl
• t/testrun/cl_dummy_fail.pl
• t/testrun/conf.pl
• t/testrun/test.fa
• t/zz-00-basic_qsub_live.t
• templateconf.yml
• test.tmp/env.test.pl
• test.tmp/test.job.conf.json
• test.tmp/test.json