Bio-MUST-Core 0.243430
- Released by
- DBAURAIN
- Version
- Release Date
- 2024-12-09
- Kwalitee
- 156.25
- Core Kwalitee
- 100
- LINKS
Bio-MUST-Core 0.243430 Latest
Kwalitee Issues
No Core Issues.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::MUST::Core | Core classes and utilities for Bio::MUST | 0.243430 | metacpan |
| Bio::MUST::Core::Ali | Multiple sequence alignment | 0.243430 | metacpan |
| Bio::MUST::Core::Ali::Stash | Thin wrapper for an indexed Ali read from disk | 0.243430 | metacpan |
| Bio::MUST::Core::Ali::Temporary | Thin wrapper for a temporary mapped Ali written on disk | 0.243430 | metacpan |
| Bio::MUST::Core::Constants | Distribution-wide constants for Bio::MUST::Core | 0.243430 | metacpan |
| Bio::MUST::Core::GeneticCode | Genetic code for conceptual translation | 0.243430 | metacpan |
| Bio::MUST::Core::GeneticCode::Factory | Genetic code factory based on NCBI gc.prt file | 0.243430 | metacpan |
| Bio::MUST::Core::IdList | Id list for selecting specific sequences | 0.243430 | metacpan |
| Bio::MUST::Core::IdMapper | Id mapper for translating sequence ids | 0.243430 | metacpan |
| Bio::MUST::Core::PostPred | Posterior predictive tests for sequences | 0.243430 | metacpan |
| Bio::MUST::Core::PostPred::Composition | Posterior predictive test for compositional bias | 0.243430 | metacpan |
| Bio::MUST::Core::Roles::Aliable | Aliable Moose role (pure interface) for Ali-like objects | 0.243430 | metacpan |
| Bio::MUST::Core::Roles::Commentable | Commentable Moose role for storable objects | 0.243430 | metacpan |
| Bio::MUST::Core::Roles::Filterable | Filterable Moose role for objects that behave as filters | 0.243430 | metacpan |
| Bio::MUST::Core::Roles::Listable | Listable Moose role for objects with implied id lists | 0.243430 | metacpan |
| Bio::MUST::Core::Roles::Taxable | Taxable Moose role for objects that query a taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Seq | Nucleotide or protein sequence | 0.243430 | metacpan |
| Bio::MUST::Core::SeqId | Modern and legacy MUST-compliant sequence id | 0.243430 | metacpan |
| Bio::MUST::Core::SeqId::Filter | Helper class for filtering seqs according to SeqId components | 0.243430 | metacpan |
| Bio::MUST::Core::SeqMask | Sequence mask for selecting specific sites | 0.243430 | metacpan |
| Bio::MUST::Core::SeqMask::Freqs | Arbitrary frequencies for sequence sites | 0.243430 | metacpan |
| Bio::MUST::Core::SeqMask::Pmsf | Posterior mean site frequencies (PMSF) for sequence sites | 0.243430 | metacpan |
| Bio::MUST::Core::SeqMask::Profiles | Evolutionary profiles for sequence sites | 0.243430 | metacpan |
| Bio::MUST::Core::SeqMask::Rates | Evolutionary rates for sequence sites | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy | NCBI Taxonomy one-stop shop | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::Category | Helper class for multiple-criterion classifier based on taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::Classifier | Helper class for multiple-criterion classifier based on taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::ColorScheme | Helper class providing color scheme for taxonomic annotations | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::Criterion | Helper class for multiple-criterion classifier based on taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::Filter | Helper class for filtering seqs according to taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::Labeler | Helper class for simple labeler based on taxonomy | 0.243430 | metacpan |
| Bio::MUST::Core::Taxonomy::MooseNCBI | Wrapper class for serializing Bio::LITE::Taxonomy::NCBI object | 0.243430 | metacpan |
| Bio::MUST::Core::Tree | Thin wrapper around Bio::Phylo trees | 0.243430 | metacpan |
| Bio::MUST::Core::Tree::Forest | Collection of (bootstrap) trees | 0.243430 | metacpan |
| Bio::MUST::Core::Tree::Splits | Tree splits (bipartitions) | 0.243430 | metacpan |
| Bio::MUST::Core::Types | Distribution-wide Moose types for Bio::MUST::Core | 0.243430 | metacpan |
| Bio::MUST::Core::Utils | Utility functions for enabling multiple file processing | 0.243430 | metacpan |