Files

• CVS/Entries
• CVS/Repository
• CVS/Root
• Changes
• GO.pm
• GO/Admin.pm
• GO/AppHandle.pm
• GO/AppHandles/.#AppHandleSqlImpl.pm.1.88
• GO/AppHandles/.#AppHandleSqlImpl.pm.1.89
• GO/AppHandles/AppHandleAbstractSqlImpl.pm
• GO/AppHandles/AppHandleCWrapper.pm
• GO/AppHandles/AppHandleCachingImpl.pm
• GO/AppHandles/AppHandleChadoSqlImpl.pm
• GO/AppHandles/AppHandlePgImpl.pm
• GO/AppHandles/AppHandleSqlImpl.pm
• GO/AppHandles/CVS/Entries
• GO/AppHandles/CVS/Repository
• GO/AppHandles/CVS/Root
• GO/CVS/Entries
• GO/CVS/Repository
• GO/CVS/Root
• GO/DebugUtils.pm
• GO/Handlers/CVS/Entries
• GO/Handlers/CVS/Repository
• GO/Handlers/CVS/Root
• GO/Handlers/db.pm
• GO/Handlers/genericdb.pm
• GO/Handlers/godb.pm
• GO/Reasoner.pm
• GO/SqlWrapper.pm
• GO/Tango.pm
• GO/TestHarness.pm
• INSTALL
• MANIFEST
• Makefile.PL
• README
• doc/CVS/Entries
• doc/CVS/Repository
• doc/CVS/Root
• doc/go-db-perl-doc.html
• scripts/CVS/Entries
• scripts/CVS/Repository
• scripts/CVS/Root
• scripts/GOshell.pl
• scripts/fill-path.pl
• scripts/go-check-release-tarball.pl
• scripts/go-create-database-and-load.pl
• scripts/go-db-reasoner.pl
• scripts/go-db-show-paths-to-root.pl
• scripts/go-do-nothing.pl
• scripts/go-dump-owl.pl
• scripts/go-dump-rdf-xml.pl
• scripts/go-fetch-associations-by-term.pl
• scripts/go-find-enriched-terms.pl
• scripts/go-get-seqs.pl
• scripts/go-manager.pl
• scripts/go-noseq-load.pl
• scripts/go-prepare-release.pl
• scripts/go-process-report-template.pl
• scripts/go-tkbrowser.pl
• scripts/go_db_install.pl
• scripts/load-go-assoc-bulk.pl
• scripts/load-go-into-db.pl
• scripts/load-linkfile-into-graph_path.pl
• scripts/load-ppod-set-full.pl
• scripts/load-refg-set-full.pl
• scripts/load-refg-set.pl
• scripts/load-sp-bulk.pl
• scripts/load-tax-hierarchy-into-db.pl
• scripts/load-tax-into-db.pl
• scripts/load_sp.pl
• scripts/process_files_for_ieas.pl
• scripts/scan_for_non-ascii.pl
• t/CVS/Entries
• t/CVS/Repository
• t/CVS/Root
• t/d000setup.t
• t/d010fetch.t
• t/d020mods.t
• t/d030alternateids.t
• t/d040graph.t
• t/d050termclash.t
• t/d060fillpath.t
• t/d061detect_assoc_err.t
• t/d070fillcount.t
• t/d080loadxrefs.t
• t/d090n_chilodren.t
• t/d100species.t
• t/d110seq.t
• t/d120load_obo.t
• t/d130load_obo2.t
• t/d140temporal.t
• t/d160logicaldef.t
• t/d170subset.t
• t/d190xrf_abbs.t
• t/d200multispecies.t
• t/d210annotation_properties.t
• t/d220obsolete_metadata.t
• t/d230load_synonym.t
• t/d240load_refg.t
• t/d250multiqualifiers.t
• t/d260regulates.t
• t/d270annotation_double_taxon.t
• t/data/CVS/Entries
• t/data/CVS/Repository
• t/data/CVS/Root
• t/data/GO.fake.defs
• t/data/GO.xrf_abbs
• t/data/anatxp.obo
• t/data/baby-component.dat
• t/data/baby-function.dat
• t/data/baby-process.dat
• t/data/biosynth1.obo
• t/data/biosynth2.obo
• t/data/comp-analysis.obo
• t/data/err-fb-assocs.fb
• t/data/function-withaltid.dat
• t/data/gene_assoc-with-quals.mgi
• t/data/gene_association-ache.all
• t/data/gene_association.GeneDB_Pfalciparum
• t/data/gene_association.goa_test
• t/data/gene_association.multitaxontest
• t/data/gene_association.pamgo.test
• t/data/gene_association.test_properties
• t/data/go-dual-test.obo
• t/data/go-truncated.obo
• t/data/goslim_generic.obo
• t/data/goslim_generic_v1_2.obo
• t/data/llm.obo
• t/data/mini-fb-assocs.fb
• t/data/muscle.obo
• t/data/obo.el
• t/data/obsolete.obo
• t/data/orthog.obo
• t/data/orthog.obo.KEEP
• t/data/regulation_test.obo
• t/data/ribosome.obo
• t/data/sgd.blast.out
• t/data/temporal.obo
• t/data/test-nucleolar.defs
• t/data/test-nucleolar.obo
• t/data/test-nucleolar.ontology
• t/data/test.obo
• t/data/test_bad_function.dat
• t/data/test_blah2go
• t/data/test_synonym.obo
• t/data/tmp.obo
• t/data/xrefs-function.dat
• t/t040cwrapper.t
• t/t050parent_check.t
• t/t060assocs.t
• t/t070associations.t
• t/t080speed.t
• t/t090getroot.t
• t/t100shallow.t
• t/t110query.t
• t/t120querybyproduct.t
• t/t130blastout.t
• t/t140n_children.t
• t/t140seq.t
• t/t150deepproduct.t
• t/t150n_parents.t
• t/t160n_associations.t
• t/t170open_graph.t
• t/t180sort.t
• t/t190term_sort.t
• t/t200recursive_close.t
• t/t210checkgraph.t
• t/t220filter_species_db.t
• t/t240wild_card_product_search.t
• t/t250species_filter.t
• t/t260fetchall.t
• t/t270getprod.t
• t/t280prd_by_sp.t
• t/t290recursiveprods.t
• t/t300selectedassocs.t
• t/t310noterm.t
• t/t320combinedquery.t
• t/t320sortxrefs.t
• t/t340xml.t
• t/t350mgievid.t
• t/t360treeiter.t
• t/t380iterator.t
• t/t390defref.t
• t/t400comment.t
• t/t410gp_synonyms.t
• t/t420selected_gene_products.t
• t/t430selected_association_list.t
• t/t440godb_prestore.t
• t/t450enrichedterm.t
• t/t460deep_product_count.t