Errors

configure_prereq_matches_use

• Module::Build

manifest_matches_dist

• MANIFEST (224) does not match dist (236):
• Missing in MANIFEST: doc/._Installation.pod, doc/._ToDo.txt, doc/._Tutorial.pod, doc/._changes.txt, exec/._tree_length.pl, lib/Bio/NEXUS/._UnalignedBlock.pm, t/._notesblock_methods.t, t/._tree_parsing.t, t/data/compliant/._02_character-polymorphic-uncertain.nex, t/data/compliant/._04_characterstatelabels_05.nex, t/data/compliant/._characters-block-interleave2.nex, t/data/compliant/._example1.nex

no_dot_underscore_files

• doc/._Installation.pod
• doc/._ToDo.txt
• doc/._Tutorial.pod
• doc/._changes.txt
• exec/._tree_length.pl
• lib/Bio/NEXUS/._UnalignedBlock.pm
• t/._notesblock_methods.t
• t/._tree_parsing.t
• t/data/compliant/._02_character-polymorphic-uncertain.nex
• t/data/compliant/._04_characterstatelabels_05.nex
• t/data/compliant/._characters-block-interleave2.nex
• t/data/compliant/._example1.nex

no_invalid_versions

• lib/Bio/NEXUS/AssumptionsBlock.pm: HASH(0x559ce5711eb8)
• lib/Bio/NEXUS/Block.pm: HASH(0x559ce5709680)
• lib/Bio/NEXUS/CharactersBlock.pm: HASH(0x559ce6394fa0)
• lib/Bio/NEXUS/CodonsBlock.pm: HASH(0x559ce56dd548)
• lib/Bio/NEXUS/DataBlock.pm: HASH(0x559ce5711a38)
• lib/Bio/NEXUS/DistancesBlock.pm: HASH(0x559ce5717bd0)
• lib/Bio/NEXUS/Functions.pm: HASH(0x559ce570e288)
• lib/Bio/NEXUS/HistoryBlock.pm: HASH(0x559ce5709cc8)
• lib/Bio/NEXUS/Matrix.pm: HASH(0x559ce5711540)
• lib/Bio/NEXUS/NHXCmd.pm: HASH(0x559ce5711c30)
• lib/Bio/NEXUS/Node.pm: HASH(0x559ce571a130)
• lib/Bio/NEXUS/NotesBlock.pm: HASH(0x559ce5711828)
• lib/Bio/NEXUS/SetsBlock.pm: HASH(0x559ce56e16c0)
• lib/Bio/NEXUS/SpanBlock.pm: HASH(0x559ce56e1720)
• lib/Bio/NEXUS/TaxUnit.pm: HASH(0x559ce5717dc8)
• lib/Bio/NEXUS/TaxUnitSet.pm: HASH(0x559ce53f44e8)
• lib/Bio/NEXUS/TaxaBlock.pm: HASH(0x559ce57064a8)
• lib/Bio/NEXUS/Tools/GraphicsParams.pm: HASH(0x559ce56dd320)
• lib/Bio/NEXUS/Tools/NexModifier.pm: HASH(0x559ce5709aa0)
• lib/Bio/NEXUS/Tools/NexPlotter.pm: HASH(0x559ce57175e8)
• lib/Bio/NEXUS/Tree.pm: HASH(0x559ce571a0d0)
• lib/Bio/NEXUS/TreesBlock.pm: HASH(0x559ce5711d08)
• lib/Bio/NEXUS/UnalignedBlock.pm: HASH(0x559ce5718068)
• lib/Bio/NEXUS/UnknownBlock.pm: HASH(0x559ce57180f8)
• lib/Bio/NEXUS/WeightSet.pm: HASH(0x559ce56e1510)

no_pod_errors

Bio-NEXUS-0.77/exec/jags.pl -- Around line 68: Unknown directive: =ignore

prereq_matches_use

• DBI

use_strict

Bio::NEXUS::._UnalignedBlock

use_warnings

Bio::NEXUS, Bio::NEXUS::._UnalignedBlock, Bio::NEXUS::AssumptionsBlock, Bio::NEXUS::Block, Bio::NEXUS::CharactersBlock, Bio::NEXUS::CodonsBlock, Bio::NEXUS::DataBlock, Bio::NEXUS::DistancesBlock, Bio::NEXUS::Functions, Bio::NEXUS::HistoryBlock, Bio::NEXUS::Matrix, Bio::NEXUS::NHXCmd, Bio::NEXUS::Node, Bio::NEXUS::NotesBlock, Bio::NEXUS::SetsBlock, Bio::NEXUS::SpanBlock, Bio::NEXUS::TaxUnit, Bio::NEXUS::TaxUnitSet, Bio::NEXUS::TaxaBlock, Bio::NEXUS::Tools::GraphicsParams, Bio::NEXUS::Tools::NexModifier, Bio::NEXUS::Tools::NexPlotter, Bio::NEXUS::Tree, Bio::NEXUS::TreesBlock, Bio::NEXUS::UnalignedBlock, Bio::NEXUS::UnknownBlock, Bio::NEXUS::Util::Exceptions, Bio::NEXUS::Util::Logger, Bio::NEXUS::WeightSet