BioPerl-DB 1.6.0_001
- Released by
- CJFIELDS
- Version
- Release Date
- 2009-10-01
- Kwalitee
- 146.88
- Core Kwalitee
- 93.75
- LINKS
BioPerl-DB 1.6.0_001 Deleted
Kwalitee Issues
- buildtool_not_executable
-
Change the permissions of Build.PL/Makefile.PL to not-executable.
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::BioEntry, Bio::DB::BioDB, Bio::DB::BioSQL::AnnotationCollectionAdaptor, Bio::DB::BioSQL::BaseDriver, Bio::DB::BioSQL::BasePersistenceAdaptor, Bio::DB::BioSQL::BioNamespaceAdaptor, Bio::DB::BioSQL::BiosequenceAdaptor, Bio::DB::BioSQL::ClusterAdaptor, Bio::DB::BioSQL::CommentAdaptor, Bio::DB::BioSQL::DBAdaptor, Bio::DB::BioSQL::DBLinkAdaptor, Bio::DB::BioSQL::LocationAdaptor, Bio::DB::BioSQL::MultiDB, Bio::DB::BioSQL::OBDA, Bio::DB::BioSQL::OntologyAdaptor, Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Oracle::PathAdaptorDriver, Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver, Bio::DB::BioSQL::Oracle::TermAdaptorDriver, Bio::DB::BioSQL::PathAdaptor, Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver, Bio::DB::BioSQL::Pg::PathAdaptorDriver, Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver, Bio::DB::BioSQL::Pg::TermAdaptorDriver, Bio::DB::BioSQL::PrimarySeqAdaptor, Bio::DB::BioSQL::ReferenceAdaptor, Bio::DB::BioSQL::RelationshipAdaptor, Bio::DB::BioSQL::SeqAdaptor, Bio::DB::BioSQL::SeqFeatureAdaptor, Bio::DB::BioSQL::SimpleValueAdaptor, Bio::DB::BioSQL::SpeciesAdaptor, Bio::DB::BioSQL::TermAdaptor, Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver, Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver, Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver, Bio::DB::BioSQL::mysql::PathAdaptorDriver, Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver, Bio::DB::BioSQL::mysql::TermAdaptorDriver, Bio::DB::CacheServer::SeqDB, Bio::DB::DBAdaptorI, Bio::DB::DBContextI, Bio::DB::DBD, Bio::DB::DBI, Bio::DB::DBI::Oracle, Bio::DB::DBI::Pg, Bio::DB::DBI::Transaction, Bio::DB::DBI::TransactionListener, Bio::DB::DBI::base, Bio::DB::DBI::mysql, Bio::DB::EasyArgv, Bio::DB::PersistenceAdaptorI, Bio::DB::Persistent::BioNamespace, Bio::DB::Persistent::PersistentObject, Bio::DB::Persistent::PersistentObjectFactory, Bio::DB::Persistent::PrimarySeq, Bio::DB::Persistent::Seq, Bio::DB::Persistent::SeqFeature, Bio::DB::PersistentObjectI, Bio::DB::Query::AbstractQuery, Bio::DB::Query::BioQuery, Bio::DB::Query::DBQueryResult, Bio::DB::Query::PrebuiltResult, Bio::DB::Query::QueryConstraint, Bio::DB::Query::QueryResultI, Bio::DB::Query::SqlGenerator, Bio::DB::Query::SqlQuery, Bio::DB::SimpleDBContext
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::BioEntry | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioDB | class creating the adaptor factory for a particular database | metacpan | |
| Bio::DB::BioSQL::AnnotationCollectionAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::BaseDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::BasePersistenceAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::BioNamespaceAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::BiosequenceAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::ClusterAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::CommentAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::DBAdaptor | metacpan | ||
| Bio::DB::BioSQL::DBLinkAdaptor | DBLink Adaptor | metacpan | |
| Bio::DB::BioSQL::LocationAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::MultiDB | metacpan | ||
| Bio::DB::BioSQL::OBDA | metacpan | ||
| Bio::DB::BioSQL::OntologyAdaptor | DB Adaptor for Ontology objects | metacpan | |
| Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Oracle::PathAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Oracle::TermAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::PathAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::PathAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::Pg::TermAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::PrimarySeqAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::ReferenceAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::RelationshipAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::SeqAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::SeqFeatureAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::SimpleValueAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::SpeciesAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::TermAdaptor | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::PathAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::BioSQL::mysql::TermAdaptorDriver | DESCRIPTION of Object | metacpan | |
| Bio::DB::CacheServer::SeqDB | Caching DB object | metacpan | |
| Bio::DB::DBAdaptorI | DESCRIPTION of Interface | metacpan | |
| Bio::DB::DBContextI | Interface for a class implementing a database context | metacpan | |
| Bio::DB::DBD | DESCRIPTION of Interface | metacpan | |
| Bio::DB::DBI | metacpan | ||
| Bio::DB::DBI::Oracle | DESCRIPTION of Object | metacpan | |
| Bio::DB::DBI::Pg | DESCRIPTION of Object | metacpan | |
| Bio::DB::DBI::Transaction | DESCRIPTION of Object | metacpan | |
| Bio::DB::DBI::TransactionListener | a simple transaction listener | metacpan | |
| Bio::DB::DBI::base | base class for drivers implementing Bio::DB::DBI | metacpan | |
| Bio::DB::DBI::mysql | DESCRIPTION of Object | metacpan | |
| Bio::DB::EasyArgv | metacpan | ||
| Bio::DB::PersistenceAdaptorI | DESCRIPTION of Interface | metacpan | |
| Bio::DB::Persistent::BioNamespace | DESCRIPTION of Object | metacpan | |
| Bio::DB::Persistent::ObjectRellMapperI | metacpan | ||
| Bio::DB::Persistent::PersistentObject | makes a given object persistent | metacpan | |
| Bio::DB::Persistent::PersistentObjectFactory | DESCRIPTION of Object | metacpan | |
| Bio::DB::Persistent::PrimarySeq | Proxy object for database PrimarySeq representations | metacpan | |
| Bio::DB::Persistent::Seq | metacpan | ||
| Bio::DB::Persistent::SeqFeature | Proxy object for database SeqFeatureI representations | metacpan | |
| Bio::DB::PersistentObjectI | DESCRIPTION of Interface | metacpan | |
| Bio::DB::Query::AbstractQuery | Abstract Query class | metacpan | |
| Bio::DB::Query::BioQuery | Object representing a query on a bioperldb | metacpan | |
| Bio::DB::Query::DBQueryResult | DESCRIPTION of Object | metacpan | |
| Bio::DB::Query::PrebuiltResult | DESCRIPTION of Object | metacpan | |
| Bio::DB::Query::QueryConstraint | a constraint on a variable value in a query | metacpan | |
| Bio::DB::Query::QueryResultI | DESCRIPTION of Interface | metacpan | |
| Bio::DB::Query::SqlGenerator | Object representing an SQL Query | metacpan | |
| Bio::DB::Query::SqlQuery | Object representing an SQL Query | metacpan | |
| Bio::DB::SimpleDBContext | a base implementation of Bio::DB::DBContextI | metacpan |