CPANTS

ONTO-PERL 1.07 Deleted

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

Take a look at the META.yml Spec at https://metacpan.org/pod/CPAN::Meta::History::Meta_1_4 (for version 1.4) or https://metacpan.org/pod/CPAN::Meta::Spec (for version 2), and change your META.yml accordingly.

Error: Expected a map structure from string or file. (requires) [Validation: 1.0]

buildtool_not_executable

Change the permissions of Build.PL/Makefile.PL to not-executable.

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

5 Extra Issues

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: OBO/CCO/CCO_ID.pm, OBO/CCO/CCO_ID_Set.pm, OBO/CCO/CCO_ID_Term_Map.pm, OBO/CCO/GoaAssociationSet.pm, OBO/CCO/GoaParser.pm, OBO/CCO/IntActParser.pm, OBO/CCO/Interaction.pm, OBO/CCO/InteractionManager.pm, OBO/CCO/Interactor.pm, OBO/CCO/NCBIParser.pm, OBO/CCO/NewIntActParser.pm, OBO/CCO/OrthoMCLParser.pm, OBO/CCO/UniProtParser.pm, OBO/CCO/XMLIntactParser.pm, OBO/Core/Dbxref.pm, OBO/Core/Def.pm, OBO/Core/GoaAssociation.pm, OBO/Core/IDspace.pm, OBO/Core/Ontology.pm, OBO/Core/Relationship.pm, OBO/Core/RelationshipType.pm, OBO/Core/Synonym.pm, OBO/Core/SynonymTypeDef.pm, OBO/Core/Term.pm, OBO/Parser/OBOParser.pm, OBO/Parser/OWLParser.pm, OBO/Util/DbxrefSet.pm, OBO/Util/ObjectIdSet.pm, OBO/Util/ObjectSet.pm, OBO/Util/Ontolome.pm, OBO/Util/Set.pm, OBO/Util/SynonymSet.pm, OBO/Util/SynonymTypeDefSet.pm, OBO/Util/TermSet.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: OBO::CCO::CCO_ID, OBO::CCO::CCO_ID_Term_Map

5 Experimental Issues

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
has_security_doc: Add SECURITY(.pod|md). See Software::Security::Policy.
security_doc_contains_contact: Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
has_contributing_doc: Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.

Modules

Name	Abstract	View
OBO::CCO::CCO_ID	A module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.	metacpan
OBO::CCO::CCO_ID_Set	An implementation of a set of OBO::CCO::CCO_ID objects.	metacpan
OBO::CCO::CCO_ID_Term_Map	A map between CCO IDs and term names.	metacpan
OBO::CCO::GoaAssociationSet	A GoaAssociationSet implementation	metacpan
OBO::CCO::GoaParser	A GOA associations to OBO translator.	metacpan
OBO::CCO::IntActParser		metacpan
OBO::CCO::Interaction	An interaction from IntAct	metacpan
OBO::CCO::InteractionManager	An IntAct to OBO parser/filter manager.	metacpan
OBO::CCO::Interactor	An interactor from IntAct	metacpan
OBO::CCO::NCBIParser	A NCBI taxonomy to OBO translator.	metacpan
OBO::CCO::NewIntActParser	A new IntAct to OBO parser/filter.	metacpan
OBO::CCO::OrthoMCLParser	An orthoMCL data to OBO translator	metacpan
OBO::CCO::UniProtParser	A UniProt to OBO translator.	metacpan
OBO::CCO::XMLIntactParser	An IntAct XML parser	metacpan
OBO::Core::Dbxref	Reference structure.	metacpan
OBO::Core::Def	A definition structure of the current term. A term must have zero or one instance of this type per term description.	metacpan
OBO::Core::GoaAssociation	A GOA association record	metacpan
OBO::Core::IDspace	A mapping between a "local" ID space and a "global" ID space	metacpan
OBO::Core::Ontology	An ontology holding terms and their relationships	metacpan
OBO::Core::Relationship	A relationship between two terms or two relationships within an ontology.	metacpan
OBO::Core::RelationshipType	A type of relationship type in an ontology	metacpan
OBO::Core::Synonym	A term synonym	metacpan
OBO::Core::SynonymTypeDef	A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier.	metacpan
OBO::Core::Term	A universal/term/class/concept in an ontology	metacpan
OBO::Parser::OBOParser	An OBO (Open Biomedical Ontologies) file parser.	metacpan
OBO::Parser::OWLParser	An OWL parser (oboInOwl mapping).	metacpan
OBO::Util::DbxrefSet	A DbxrefSet implementation	metacpan
OBO::Util::ObjectIdSet	A Set implementation of object Ids	metacpan
OBO::Util::ObjectSet	An implementation of a set of ontology objects	metacpan
OBO::Util::Ontolome	A set of ontologies	metacpan
OBO::Util::Set	A Set implementation	metacpan
OBO::Util::SynonymSet	A Set implementation of Synonyms	metacpan
OBO::Util::SynonymTypeDefSet	A Set implementation of Synonym Types	metacpan
OBO::Util::TermSet	A Set implementation	metacpan

Other Files


Changes	metacpan
MANIFEST	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README	metacpan