CPANTS

Bio-MAGE 20020902.1

Errors

no_invalid_versions

Array/Array.pm: HASH(0x5609d49e3500)
Array/Array/Array.pm: HASH(0x5609d4920ac0)
Array/ArrayGroup/ArrayGroup.pm: HASH(0x5609d482bcb0)
Array/ArrayManufacture/ArrayManufacture.pm: HASH(0x5609d4895778)
Array/ArrayManufactureDeviation/ArrayManufactureDeviation.pm: HASH(0x5609d496e3e8)
Array/FeatureDefect/FeatureDefect.pm: HASH(0x5609d495fe58)
Array/Fiducial/Fiducial.pm: HASH(0x5609d4965278)
Array/ManufactureLIMS/ManufactureLIMS.pm: HASH(0x5609d41f4460)
Array/ManufactureLIMSBiomaterial/ManufactureLIMSBiomaterial.pm: HASH(0x5609d4908c38)
Array/PositionDelta/PositionDelta.pm: HASH(0x5609d4903ae8)
Array/ZoneDefect/ZoneDefect.pm: HASH(0x5609d498d780)
ArrayDesign/ArrayDesign.pm: HASH(0x5609d48fb168)
ArrayDesign/ArrayDesign/ArrayDesign.pm: HASH(0x5609d4920940)
ArrayDesign/CompositeGroup/CompositeGroup.pm: HASH(0x5609d49ae250)
ArrayDesign/DesignElementGroup/DesignElementGroup.pm: HASH(0x5609d47f47e8)
ArrayDesign/FeatureGroup/FeatureGroup.pm: HASH(0x5609d49ae9d0)
ArrayDesign/PhysicalArrayDesign/PhysicalArrayDesign.pm: HASH(0x5609d4a5f568)
ArrayDesign/ReporterGroup/ReporterGroup.pm: HASH(0x5609d48acd78)
ArrayDesign/Zone/Zone.pm: HASH(0x5609d4965548)
ArrayDesign/ZoneGroup/ZoneGroup.pm: HASH(0x5609d48a3cf8)
ArrayDesign/ZoneLayout/ZoneLayout.pm: HASH(0x5609d4170e90)
Association/Association.pm: HASH(0x5609d4909010)
AuditAndSecurity/Audit/Audit.pm: HASH(0x5609d41f4cb8)
AuditAndSecurity/AuditAndSecurity.pm: HASH(0x5609d48f1380)
AuditAndSecurity/Contact/Contact.pm: HASH(0x5609d4a839f8)
AuditAndSecurity/Organization/Organization.pm: HASH(0x5609d4978128)
AuditAndSecurity/Person/Person.pm: HASH(0x5609d4947a68)
AuditAndSecurity/Security/Security.pm: HASH(0x5609d48d4140)
AuditAndSecurity/SecurityGroup/SecurityGroup.pm: HASH(0x5609d49bc968)
BQS/BQS.pm: HASH(0x5609d48bc540)
BQS/BibliographicReference/BibliographicReference.pm: HASH(0x5609d49fb2f0)
Base/Base.pm: HASH(0x5609d493e5c8)
BioAssay/BioAssay.pm: HASH(0x5609d48a41c0)
BioAssay/BioAssay/BioAssay.pm: HASH(0x5609d48f1278)
BioAssay/BioAssayCreation/BioAssayCreation.pm: HASH(0x5609d495ff78)
BioAssay/BioAssayTreatment/BioAssayTreatment.pm: HASH(0x5609d49480c8)
BioAssay/Channel/Channel.pm: HASH(0x5609d48f0b28)
BioAssay/DerivedBioAssay/DerivedBioAssay.pm: HASH(0x5609d416e2e8)
BioAssay/FeatureExtraction/FeatureExtraction.pm: HASH(0x5609d4895850)
BioAssay/Hybridization/Hybridization.pm: HASH(0x5609d4ab6e18)
BioAssay/Image/Image.pm: HASH(0x5609d499ed28)
BioAssay/ImageAcquisition/ImageAcquisition.pm: HASH(0x5609d49399a8)
BioAssay/MeasuredBioAssay/MeasuredBioAssay.pm: HASH(0x5609d4939150)
BioAssay/PhysicalBioAssay/PhysicalBioAssay.pm: HASH(0x5609d41f9080)
BioAssayData/BioAssayData.pm: HASH(0x5609d498d0c0)
BioAssayData/BioAssayData/BioAssayData.pm: HASH(0x5609d48960d8)
BioAssayData/BioAssayDatum/BioAssayDatum.pm: HASH(0x5609d48a3db8)
BioAssayData/BioAssayDimension/BioAssayDimension.pm: HASH(0x5609d4912b70)
BioAssayData/BioAssayMap/BioAssayMap.pm: HASH(0x5609d49c58a0)
BioAssayData/BioAssayMapping/BioAssayMapping.pm: HASH(0x5609d48caaa8)
BioAssayData/BioDataCube/BioDataCube.pm: HASH(0x5609d49fa588)
BioAssayData/BioDataTuples/BioDataTuples.pm: HASH(0x5609d49a5038)
BioAssayData/BioDataValues/BioDataValues.pm: HASH(0x5609d48fa970)
BioAssayData/CompositeSequenceDimension/CompositeSequenceDimension.pm: HASH(0x5609d49d91f8)
BioAssayData/DerivedBioAssayData/DerivedBioAssayData.pm: HASH(0x5609d495f750)
BioAssayData/DesignElementDimension/DesignElementDimension.pm: HASH(0x5609d4920e08)
BioAssayData/DesignElementMap/DesignElementMap.pm: HASH(0x5609d48ca808)
BioAssayData/DesignElementMapping/DesignElementMapping.pm: HASH(0x5609d47f4698)
BioAssayData/FeatureDimension/FeatureDimension.pm: HASH(0x5609d47fd508)
BioAssayData/MeasuredBioAssayData/MeasuredBioAssayData.pm: HASH(0x5609d3ff4e40)
BioAssayData/QuantitationTypeDimension/QuantitationTypeDimension.pm: HASH(0x5609d4a8cec0)
BioAssayData/QuantitationTypeMap/QuantitationTypeMap.pm: HASH(0x5609d492fba8)
BioAssayData/QuantitationTypeMapping/QuantitationTypeMapping.pm: HASH(0x5609d48eb210)
BioAssayData/ReporterDimension/ReporterDimension.pm: HASH(0x5609d49a4f30)
BioAssayData/Transformation/Transformation.pm: HASH(0x5609d48f1578)
BioEvent/BioEvent.pm: HASH(0x5609d418e350)
BioEvent/BioEvent/BioEvent.pm: HASH(0x5609d47f4308)
BioEvent/Map/Map.pm: HASH(0x5609d49d57d8)
BioMaterial/BioMaterial.pm: HASH(0x5609d4903380)
BioMaterial/BioMaterial/BioMaterial.pm: HASH(0x5609d4947b70)
BioMaterial/BioMaterialMeasurement/BioMaterialMeasurement.pm: HASH(0x5609d2b140e8)
BioMaterial/BioSample/BioSample.pm: HASH(0x5609d48a4148)
BioMaterial/BioSource/BioSource.pm: HASH(0x5609d493ee38)
BioMaterial/Compound/Compound.pm: HASH(0x5609d47f4320)
BioMaterial/CompoundMeasurement/CompoundMeasurement.pm: HASH(0x5609d4a045f8)
BioMaterial/LabeledExtract/LabeledExtract.pm: HASH(0x5609d49653c8)
BioMaterial/Treatment/Treatment.pm: HASH(0x5609d48a3ff8)
BioSequence/BioSequence.pm: HASH(0x5609d492a2d8)
BioSequence/BioSequence/BioSequence.pm: HASH(0x5609d49bcb30)
BioSequence/SeqFeature/SeqFeature.pm: HASH(0x5609d4947e58)
BioSequence/SeqFeatureLocation/SeqFeatureLocation.pm: HASH(0x5609d48a4238)
BioSequence/SequencePosition/SequencePosition.pm: HASH(0x5609d48ca580)
Describable/Describable.pm: HASH(0x5609d4a04730)
Description/Database/Database.pm: HASH(0x5609d4a8cfb0)
Description/DatabaseEntry/DatabaseEntry.pm: HASH(0x5609d4996968)
Description/Description.pm: HASH(0x5609d4a045e0)
Description/Description/Description.pm: HASH(0x5609d4956b80)
Description/ExternalReference/ExternalReference.pm: HASH(0x5609d49c5d50)
Description/OntologyEntry/OntologyEntry.pm: HASH(0x5609d49cb668)
DesignElement/CompositeCompositeMap/CompositeCompositeMap.pm: HASH(0x5609d48faeb0)
DesignElement/CompositePosition/CompositePosition.pm: HASH(0x5609d48a3e30)
DesignElement/CompositeSequence/CompositeSequence.pm: HASH(0x5609d49fb1e8)
DesignElement/DesignElement.pm: HASH(0x5609d492a5d8)
DesignElement/DesignElement/DesignElement.pm: HASH(0x5609d495fe10)
DesignElement/Feature/Feature.pm: HASH(0x5609d495f870)
DesignElement/FeatureInformation/FeatureInformation.pm: HASH(0x5609d4a837d0)
DesignElement/FeatureLocation/FeatureLocation.pm: HASH(0x5609d4956e50)
DesignElement/FeatureReporterMap/FeatureReporterMap.pm: HASH(0x5609d499eb00)
DesignElement/MismatchInformation/MismatchInformation.pm: HASH(0x5609d4126008)
DesignElement/Position/Position.pm: HASH(0x5609d49961b8)
DesignElement/Reporter/Reporter.pm: HASH(0x5609d4ac5788)
DesignElement/ReporterCompositeMap/ReporterCompositeMap.pm: HASH(0x5609d49182a8)
DesignElement/ReporterPosition/ReporterPosition.pm: HASH(0x5609d49b34d8)
Experiment/Experiment.pm: HASH(0x5609d4895628)
Experiment/Experiment/Experiment.pm: HASH(0x5609d4ae4d18)
Experiment/ExperimentDesign/ExperimentDesign.pm: HASH(0x5609d48ac6d0)
Experiment/ExperimentalFactor/ExperimentalFactor.pm: HASH(0x5609d49514d8)
Experiment/FactorValue/FactorValue.pm: HASH(0x5609d488c868)
Extendable/Extendable.pm: HASH(0x5609d4918518)
HigherLevelAnalysis/BioAssayDataCluster/BioAssayDataCluster.pm: HASH(0x5609d49649f0)
HigherLevelAnalysis/HigherLevelAnalysis.pm: HASH(0x5609d49ae4a8)
HigherLevelAnalysis/Node/Node.pm: HASH(0x5609d493e058)
HigherLevelAnalysis/NodeContents/NodeContents.pm: HASH(0x5609d49faa20)
HigherLevelAnalysis/NodeValue/NodeValue.pm: HASH(0x5609d488cdf0)
Identifiable/Identifiable.pm: HASH(0x5609d495f720)
MAGE.pm: HASH(0x5609d49ae7a8)
Measurement/ConcentrationUnit/ConcentrationUnit.pm: HASH(0x5609d49567c0)
Measurement/DistanceUnit/DistanceUnit.pm: HASH(0x5609d4951790)
Measurement/MassUnit/MassUnit.pm: HASH(0x5609d49395e8)
Measurement/Measurement.pm: HASH(0x5609d49a4870)
Measurement/Measurement/Measurement.pm: HASH(0x5609d49adda0)
Measurement/QuantityUnit/QuantityUnit.pm: HASH(0x5609d49f2050)
Measurement/TemperatureUnit/TemperatureUnit.pm: HASH(0x5609d48ad2a0)
Measurement/TimeUnit/TimeUnit.pm: HASH(0x5609d48ad270)
Measurement/Unit/Unit.pm: HASH(0x5609d4996ef0)
Measurement/VolumeUnit/VolumeUnit.pm: HASH(0x5609d49f2008)
NameValueType/NameValueType.pm: HASH(0x5609d4895670)
Protocol/Hardware/Hardware.pm: HASH(0x5609d48953d0)
Protocol/HardwareApplication/HardwareApplication.pm: HASH(0x5609d48a4268)
Protocol/Parameter/Parameter.pm: HASH(0x5609d48ca3a0)
Protocol/ParameterValue/ParameterValue.pm: HASH(0x5609d47f3f60)
Protocol/Parameterizable/Parameterizable.pm: HASH(0x5609d489efa8)
Protocol/ParameterizableApplication/ParameterizableApplication.pm: HASH(0x5609d48a3dd0)
Protocol/Protocol.pm: HASH(0x5609d495fa20)
Protocol/Protocol/Protocol.pm: HASH(0x5609d497cd00)
Protocol/ProtocolApplication/ProtocolApplication.pm: HASH(0x5609d416e288)
Protocol/Software/Software.pm: HASH(0x5609d498d3f0)
Protocol/SoftwareApplication/SoftwareApplication.pm: HASH(0x5609d498d720)
QuantitationType/ConfidenceIndicator/ConfidenceIndicator.pm: HASH(0x5609d493ed78)
QuantitationType/DerivedSignal/DerivedSignal.pm: HASH(0x5609d48fa808)
QuantitationType/Error/Error.pm: HASH(0x5609d48eb1f8)
QuantitationType/ExpectedValue/ExpectedValue.pm: HASH(0x5609d3a15758)
QuantitationType/Failed/Failed.pm: HASH(0x5609d48ca8c8)
QuantitationType/MeasuredSignal/MeasuredSignal.pm: HASH(0x5609d4895748)
QuantitationType/PValue/PValue.pm: HASH(0x5609d488ce50)
QuantitationType/PresentAbsent/PresentAbsent.pm: HASH(0x5609d41ff440)
QuantitationType/QuantitationType.pm: HASH(0x5609d49e3050)
QuantitationType/QuantitationType/QuantitationType.pm: HASH(0x5609d49bcb78)
QuantitationType/Ratio/Ratio.pm: HASH(0x5609d48ad330)
QuantitationType/SpecializedQuantitationType/SpecializedQuantitationType.pm: HASH(0x5609d48dd830)
QuantitationType/StandardQuantitationType/StandardQuantitationType.pm: HASH(0x5609d48ddad0)

no_pod_errors

Bio-MAGE-20020902.1/Array/Array/Array.pm -- Around line 105: '=item' outside of any '=over' Around line 380: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ArrayGroup/ArrayGroup.pm -- Around line 123: '=item' outside of any '=over' Around line 418: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ArrayManufacture/ArrayManufacture.pm -- Around line 101: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ArrayManufactureDeviation/ArrayManufactureDeviation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/FeatureDefect/FeatureDefect.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/Fiducial/Fiducial.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ManufactureLIMS/ManufactureLIMS.pm -- Around line 100: '=item' outside of any '=over' Around line 345: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ManufactureLIMSBiomaterial/ManufactureLIMSBiomaterial.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/PositionDelta/PositionDelta.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Array/ZoneDefect/ZoneDefect.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/ArrayDesign/ArrayDesign/ArrayDesign.pm -- Around line 112: '=item' outside of any '=over' Around line 382: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/ArrayDesign/CompositeGroup/CompositeGroup.pm -- Around line 76: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/ArrayDesign/DesignElementGroup/DesignElementGroup.pm -- Around line 97: '=item' outside of any '=over' Around line 342: You forgot a '=back' before '=head2' Around line 351: You can't have =items (as at line 356) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/ArrayDesign/FeatureGroup/FeatureGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 381: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/ArrayDesign/PhysicalArrayDesign/PhysicalArrayDesign.pm -- Around line 80: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/ArrayDesign/ReporterGroup/ReporterGroup.pm -- Around line 77: '=item' outside of any '=over' Around line 327: You forgot a '=back' before '=head2' Around line 336: You can't have =items (as at line 341) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/ArrayDesign/Zone/Zone.pm -- Around line 101: '=item' outside of any '=over' Around line 371: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/ArrayDesign/ZoneGroup/ZoneGroup.pm -- Around line 101: '=item' outside of any '=over' Around line 346: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/ArrayDesign/ZoneLayout/ZoneLayout.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/AuditAndSecurity/Audit/Audit.pm -- Around line 85: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/AuditAndSecurity/Contact/Contact.pm -- Around line 115: '=item' outside of any '=over' Around line 385: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/AuditAndSecurity/Organization/Organization.pm -- Around line 76: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Around line 360: You can't have =items (as at line 365) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/AuditAndSecurity/Person/Person.pm -- Around line 89: '=item' outside of any '=over' Around line 379: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/AuditAndSecurity/Security/Security.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/AuditAndSecurity/SecurityGroup/SecurityGroup.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BQS/BibliographicReference/BibliographicReference.pm -- Around line 118: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Base/Base.pm -- Around line 43: '=item' outside of any '=over' Around line 203: You forgot a '=back' before '=head1' Bio-MAGE-20020902.1/BioAssay/BioAssay/BioAssay.pm -- Around line 98: '=item' outside of any '=over' Around line 343: You forgot a '=back' before '=head2' Around line 352: You can't have =items (as at line 357) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/BioAssayCreation/BioAssayCreation.pm -- Around line 95: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/BioAssayTreatment/BioAssayTreatment.pm -- Around line 91: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/Channel/Channel.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/DerivedBioAssay/DerivedBioAssay.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Around line 353: You can't have =items (as at line 358) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/FeatureExtraction/FeatureExtraction.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/Hybridization/Hybridization.pm -- Around line 69: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Around line 333: You can't have =items (as at line 338) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/Image/Image.pm -- Around line 86: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssay/ImageAcquisition/ImageAcquisition.pm -- Around line 76: '=item' outside of any '=over' Around line 331: You forgot a '=back' before '=head2' Around line 340: You can't have =items (as at line 345) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/MeasuredBioAssay/MeasuredBioAssay.pm -- Around line 80: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Around line 344: You can't have =items (as at line 349) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssay/PhysicalBioAssay/PhysicalBioAssay.pm -- Around line 84: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Around line 353: You can't have =items (as at line 358) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/BioAssayData/BioAssayData.pm -- Around line 106: '=item' outside of any '=over' Around line 366: You forgot a '=back' before '=head2' Around line 375: You can't have =items (as at line 380) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/BioAssayDatum/BioAssayDatum.pm -- Around line 89: '=item' outside of any '=over' Around line 319: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/BioAssayDimension/BioAssayDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/BioAssayMap/BioAssayMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/BioAssayMapping/BioAssayMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/BioDataCube/BioDataCube.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/BioDataTuples/BioDataTuples.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/BioDataValues/BioDataValues.pm -- Around line 83: '=item' outside of any '=over' Around line 293: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/CompositeSequenceDimension/CompositeSequenceDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/DerivedBioAssayData/DerivedBioAssayData.pm -- Around line 76: '=item' outside of any '=over' Around line 341: You forgot a '=back' before '=head2' Around line 350: You can't have =items (as at line 355) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/DesignElementDimension/DesignElementDimension.pm -- Around line 86: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Around line 330: You can't have =items (as at line 335) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/DesignElementMap/DesignElementMap.pm -- Around line 86: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/DesignElementMapping/DesignElementMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/FeatureDimension/FeatureDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/MeasuredBioAssayData/MeasuredBioAssayData.pm -- Around line 69: '=item' outside of any '=over' Around line 329: You forgot a '=back' before '=head2' Around line 338: You can't have =items (as at line 343) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/QuantitationTypeDimension/QuantitationTypeDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/QuantitationTypeMap/QuantitationTypeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/QuantitationTypeMapping/QuantitationTypeMapping.pm -- Around line 76: '=item' outside of any '=over' Around line 291: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioAssayData/ReporterDimension/ReporterDimension.pm -- Around line 76: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Around line 325: You can't have =items (as at line 330) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioAssayData/Transformation/Transformation.pm -- Around line 92: '=item' outside of any '=over' Around line 357: You forgot a '=back' before '=head2' Around line 366: You can't have =items (as at line 371) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioEvent/BioEvent/BioEvent.pm -- Around line 102: '=item' outside of any '=over' Around line 342: You forgot a '=back' before '=head2' Around line 351: You can't have =items (as at line 356) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioEvent/Map/Map.pm -- Around line 86: '=item' outside of any '=over' Around line 326: You forgot a '=back' before '=head2' Around line 335: You can't have =items (as at line 340) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioMaterial/BioMaterial/BioMaterial.pm -- Around line 105: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioMaterial/BioMaterialMeasurement/BioMaterialMeasurement.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioMaterial/BioSample/BioSample.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioMaterial/BioSource/BioSource.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioMaterial/Compound/Compound.pm -- Around line 89: '=item' outside of any '=over' Around line 344: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioMaterial/CompoundMeasurement/CompoundMeasurement.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioMaterial/LabeledExtract/LabeledExtract.pm -- Around line 76: '=item' outside of any '=over' Around line 336: You forgot a '=back' before '=head2' Around line 345: You can't have =items (as at line 350) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/BioMaterial/Treatment/Treatment.pm -- Around line 93: '=item' outside of any '=over' Around line 358: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioSequence/BioSequence/BioSequence.pm -- Around line 113: '=item' outside of any '=over' Around line 398: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioSequence/SeqFeature/SeqFeature.pm -- Around line 81: '=item' outside of any '=over' Around line 316: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioSequence/SeqFeatureLocation/SeqFeatureLocation.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/BioSequence/SequencePosition/SequencePosition.pm -- Around line 94: '=item' outside of any '=over' Around line 314: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Describable/Describable.pm -- Around line 125: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Description/Database/Database.pm -- Around line 85: '=item' outside of any '=over' Around line 335: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Description/DatabaseEntry/DatabaseEntry.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Description/Description/Description.pm -- Around line 97: '=item' outside of any '=over' Around line 352: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Description/ExternalReference/ExternalReference.pm -- Around line 88: '=item' outside of any '=over' Around line 318: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Description/OntologyEntry/OntologyEntry.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/DesignElement/CompositeCompositeMap/CompositeCompositeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/CompositePosition/CompositePosition.pm -- Around line 80: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Around line 319: You can't have =items (as at line 324) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/CompositeSequence/CompositeSequence.pm -- Around line 85: '=item' outside of any '=over' Around line 340: You forgot a '=back' before '=head2' Around line 349: You can't have =items (as at line 354) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/DesignElement/DesignElement.pm -- Around line 93: '=item' outside of any '=over' Around line 333: You forgot a '=back' before '=head2' Around line 342: You can't have =items (as at line 347) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/Feature/Feature.pm -- Around line 97: '=item' outside of any '=over' Around line 367: You forgot a '=back' before '=head2' Around line 376: You can't have =items (as at line 381) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/FeatureInformation/FeatureInformation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/DesignElement/FeatureLocation/FeatureLocation.pm -- Around line 80: '=item' outside of any '=over' Around line 300: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/DesignElement/FeatureReporterMap/FeatureReporterMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/MismatchInformation/MismatchInformation.pm -- Around line 84: '=item' outside of any '=over' Around line 309: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/DesignElement/Position/Position.pm -- Around line 85: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/DesignElement/Reporter/Reporter.pm -- Around line 90: '=item' outside of any '=over' Around line 350: You forgot a '=back' before '=head2' Around line 359: You can't have =items (as at line 364) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/ReporterCompositeMap/ReporterCompositeMap.pm -- Around line 80: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Around line 339: You can't have =items (as at line 344) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/DesignElement/ReporterPosition/ReporterPosition.pm -- Around line 80: '=item' outside of any '=over' Around line 310: You forgot a '=back' before '=head2' Around line 319: You can't have =items (as at line 324) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Experiment/Experiment/Experiment.pm -- Around line 92: '=item' outside of any '=over' Around line 352: You forgot a '=back' before '=head2' Around line 361: You can't have =items (as at line 366) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Experiment/ExperimentDesign/ExperimentDesign.pm -- Around line 96: '=item' outside of any '=over' Around line 351: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Experiment/ExperimentalFactor/ExperimentalFactor.pm -- Around line 84: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Experiment/FactorValue/FactorValue.pm -- Around line 84: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Extendable/Extendable.pm -- Around line 153: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/HigherLevelAnalysis/BioAssayDataCluster/BioAssayDataCluster.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/HigherLevelAnalysis/Node/Node.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/HigherLevelAnalysis/NodeContents/NodeContents.pm -- Around line 84: '=item' outside of any '=over' Around line 324: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/HigherLevelAnalysis/NodeValue/NodeValue.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Identifiable/Identifiable.pm -- Around line 175: '=item' outside of any '=over' Around line 410: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/ConcentrationUnit/ConcentrationUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/DistanceUnit/DistanceUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/MassUnit/MassUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/Measurement/Measurement.pm -- Around line 93: '=item' outside of any '=over' Around line 328: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/QuantityUnit/QuantityUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/TemperatureUnit/TemperatureUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/TimeUnit/TimeUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/Unit/Unit.pm -- Around line 105: '=item' outside of any '=over' Around line 320: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Measurement/VolumeUnit/VolumeUnit.pm -- Around line 76: '=item' outside of any '=over' Around line 296: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/NameValueType/NameValueType.pm -- Around line 74: '=item' outside of any '=over' Around line 299: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/Hardware/Hardware.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/HardwareApplication/HardwareApplication.pm -- Around line 81: '=item' outside of any '=over' Around line 321: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/Parameter/Parameter.pm -- Around line 80: '=item' outside of any '=over' Around line 325: You forgot a '=back' before '=head2' Around line 334: You can't have =items (as at line 339) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Protocol/ParameterValue/ParameterValue.pm -- Around line 81: '=item' outside of any '=over' Around line 301: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/Parameterizable/Parameterizable.pm -- Around line 98: '=item' outside of any '=over' Around line 343: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/ParameterizableApplication/ParameterizableApplication.pm -- Around line 93: '=item' outside of any '=over' Around line 323: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/Protocol/Protocol.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/ProtocolApplication/ProtocolApplication.pm -- Around line 93: '=item' outside of any '=over' Around line 348: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/Protocol/Software/Software.pm -- Around line 88: '=item' outside of any '=over' Around line 353: You forgot a '=back' before '=head2' Around line 362: You can't have =items (as at line 367) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/Protocol/SoftwareApplication/SoftwareApplication.pm -- Around line 85: '=item' outside of any '=over' Around line 330: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/QuantitationType/ConfidenceIndicator/ConfidenceIndicator.pm -- Around line 93: '=item' outside of any '=over' Around line 363: You forgot a '=back' before '=head2' Around line 372: You can't have =items (as at line 377) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/DerivedSignal/DerivedSignal.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/Error/Error.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/ExpectedValue/ExpectedValue.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/Failed/Failed.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/MeasuredSignal/MeasuredSignal.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/PValue/PValue.pm -- Around line 69: '=item' outside of any '=over' Around line 339: You forgot a '=back' before '=head2' Around line 348: You can't have =items (as at line 353) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/PresentAbsent/PresentAbsent.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/QuantitationType/QuantitationType.pm -- Around line 112: '=item' outside of any '=over' Around line 377: You forgot a '=back' before '=head2' Bio-MAGE-20020902.1/QuantitationType/Ratio/Ratio.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/SpecializedQuantitationType/SpecializedQuantitationType.pm -- Around line 69: '=item' outside of any '=over' Around line 334: You forgot a '=back' before '=head2' Around line 343: You can't have =items (as at line 348) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/QuantitationType/StandardQuantitationType/StandardQuantitationType.pm -- Around line 95: '=item' outside of any '=over' Around line 360: You forgot a '=back' before '=head2' Around line 369: You can't have =items (as at line 374) unless the first thing after the =over is an =item Bio-MAGE-20020902.1/SQLUtils/SQLUtils.pm -- Around line 249: '=item' outside of any '=over' =over without closing =back Bio-MAGE-20020902.1/XMLUtils/XMLUtils.pm -- Around line 176: '=item' outside of any '=over' Around line 620: You forgot a '=back' before '=head1'

prereq_matches_use

Tie::IxHash
XML::Xerces

use_warnings

Bio::MAGE, Bio::MAGE::Array, Bio::MAGE::Array::Array, Bio::MAGE::Array::ArrayGroup, Bio::MAGE::Array::ArrayManufacture, Bio::MAGE::Array::ArrayManufactureDeviation, Bio::MAGE::Array::FeatureDefect, Bio::MAGE::Array::Fiducial, Bio::MAGE::Array::ManufactureLIMS, Bio::MAGE::Array::ManufactureLIMSBiomaterial, Bio::MAGE::Array::PositionDelta, Bio::MAGE::Array::ZoneDefect, Bio::MAGE::ArrayDesign, Bio::MAGE::ArrayDesign::ArrayDesign, Bio::MAGE::ArrayDesign::CompositeGroup, Bio::MAGE::ArrayDesign::DesignElementGroup, Bio::MAGE::ArrayDesign::FeatureGroup, Bio::MAGE::ArrayDesign::PhysicalArrayDesign, Bio::MAGE::ArrayDesign::ReporterGroup, Bio::MAGE::ArrayDesign::Zone, Bio::MAGE::ArrayDesign::ZoneGroup, Bio::MAGE::ArrayDesign::ZoneLayout, Bio::MAGE::Association, Bio::MAGE::AuditAndSecurity, Bio::MAGE::AuditAndSecurity::Audit, Bio::MAGE::AuditAndSecurity::Contact, Bio::MAGE::AuditAndSecurity::Organization, Bio::MAGE::AuditAndSecurity::Person, Bio::MAGE::AuditAndSecurity::Security, Bio::MAGE::AuditAndSecurity::SecurityGroup, Bio::MAGE::BQS, Bio::MAGE::BQS::BibliographicReference, Bio::MAGE::Base, Bio::MAGE::BioAssay, Bio::MAGE::BioAssay::BioAssay, Bio::MAGE::BioAssay::BioAssayCreation, Bio::MAGE::BioAssay::BioAssayTreatment, Bio::MAGE::BioAssay::Channel, Bio::MAGE::BioAssay::DerivedBioAssay, Bio::MAGE::BioAssay::FeatureExtraction, Bio::MAGE::BioAssay::Hybridization, Bio::MAGE::BioAssay::Image, Bio::MAGE::BioAssay::ImageAcquisition, Bio::MAGE::BioAssay::MeasuredBioAssay, Bio::MAGE::BioAssay::PhysicalBioAssay, Bio::MAGE::BioAssayData, Bio::MAGE::BioAssayData::BioAssayData, Bio::MAGE::BioAssayData::BioAssayDatum, Bio::MAGE::BioAssayData::BioAssayDimension, Bio::MAGE::BioAssayData::BioAssayMap, Bio::MAGE::BioAssayData::BioAssayMapping, Bio::MAGE::BioAssayData::BioDataCube, Bio::MAGE::BioAssayData::BioDataTuples, Bio::MAGE::BioAssayData::BioDataValues, Bio::MAGE::BioAssayData::CompositeSequenceDimension, Bio::MAGE::BioAssayData::DerivedBioAssayData, Bio::MAGE::BioAssayData::DesignElementDimension, Bio::MAGE::BioAssayData::DesignElementMap, Bio::MAGE::BioAssayData::DesignElementMapping, Bio::MAGE::BioAssayData::FeatureDimension, Bio::MAGE::BioAssayData::MeasuredBioAssayData, Bio::MAGE::BioAssayData::QuantitationTypeDimension, Bio::MAGE::BioAssayData::QuantitationTypeMap, Bio::MAGE::BioAssayData::QuantitationTypeMapping, Bio::MAGE::BioAssayData::ReporterDimension, Bio::MAGE::BioAssayData::Transformation, Bio::MAGE::BioEvent, Bio::MAGE::BioEvent::BioEvent, Bio::MAGE::BioEvent::Map, Bio::MAGE::BioMaterial, Bio::MAGE::BioMaterial::BioMaterial, Bio::MAGE::BioMaterial::BioMaterialMeasurement, Bio::MAGE::BioMaterial::BioSample, Bio::MAGE::BioMaterial::BioSource, Bio::MAGE::BioMaterial::Compound, Bio::MAGE::BioMaterial::CompoundMeasurement, Bio::MAGE::BioMaterial::LabeledExtract, Bio::MAGE::BioMaterial::Treatment, Bio::MAGE::BioSequence, Bio::MAGE::BioSequence::BioSequence, Bio::MAGE::BioSequence::SeqFeature, Bio::MAGE::BioSequence::SeqFeatureLocation, Bio::MAGE::BioSequence::SequencePosition, Bio::MAGE::Describable, Bio::MAGE::Description, Bio::MAGE::Description::Database, Bio::MAGE::Description::DatabaseEntry, Bio::MAGE::Description::Description, Bio::MAGE::Description::ExternalReference, Bio::MAGE::Description::OntologyEntry, Bio::MAGE::DesignElement, Bio::MAGE::DesignElement::CompositeCompositeMap, Bio::MAGE::DesignElement::CompositePosition, Bio::MAGE::DesignElement::CompositeSequence, Bio::MAGE::DesignElement::DesignElement, Bio::MAGE::DesignElement::Feature, Bio::MAGE::DesignElement::FeatureInformation, Bio::MAGE::DesignElement::FeatureLocation, Bio::MAGE::DesignElement::FeatureReporterMap, Bio::MAGE::DesignElement::MismatchInformation, Bio::MAGE::DesignElement::Position, Bio::MAGE::DesignElement::Reporter, Bio::MAGE::DesignElement::ReporterCompositeMap, Bio::MAGE::DesignElement::ReporterPosition, Bio::MAGE::Experiment, Bio::MAGE::Experiment::Experiment, Bio::MAGE::Experiment::ExperimentDesign, Bio::MAGE::Experiment::ExperimentalFactor, Bio::MAGE::Experiment::FactorValue, Bio::MAGE::Extendable, Bio::MAGE::HigherLevelAnalysis, Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster, Bio::MAGE::HigherLevelAnalysis::Node, Bio::MAGE::HigherLevelAnalysis::NodeContents, Bio::MAGE::HigherLevelAnalysis::NodeValue, Bio::MAGE::Identifiable, Bio::MAGE::Measurement, Bio::MAGE::Measurement::ConcentrationUnit, Bio::MAGE::Measurement::DistanceUnit, Bio::MAGE::Measurement::MassUnit, Bio::MAGE::Measurement::Measurement, Bio::MAGE::Measurement::QuantityUnit, Bio::MAGE::Measurement::TemperatureUnit, Bio::MAGE::Measurement::TimeUnit, Bio::MAGE::Measurement::Unit, Bio::MAGE::Measurement::VolumeUnit, Bio::MAGE::NameValueType, Bio::MAGE::Protocol, Bio::MAGE::Protocol::Hardware, Bio::MAGE::Protocol::HardwareApplication, Bio::MAGE::Protocol::Parameter, Bio::MAGE::Protocol::ParameterValue, Bio::MAGE::Protocol::Parameterizable, Bio::MAGE::Protocol::ParameterizableApplication, Bio::MAGE::Protocol::Protocol, Bio::MAGE::Protocol::ProtocolApplication, Bio::MAGE::Protocol::Software, Bio::MAGE::Protocol::SoftwareApplication, Bio::MAGE::QuantitationType, Bio::MAGE::QuantitationType::ConfidenceIndicator, Bio::MAGE::QuantitationType::DerivedSignal, Bio::MAGE::QuantitationType::Error, Bio::MAGE::QuantitationType::ExpectedValue, Bio::MAGE::QuantitationType::Failed, Bio::MAGE::QuantitationType::MeasuredSignal, Bio::MAGE::QuantitationType::PValue, Bio::MAGE::QuantitationType::PresentAbsent, Bio::MAGE::QuantitationType::QuantitationType, Bio::MAGE::QuantitationType::Ratio, Bio::MAGE::QuantitationType::SpecializedQuantitationType, Bio::MAGE::QuantitationType::StandardQuantitationType, Bio::MAGE::SQLWriter, Bio::MAGE::XMLReader