Files

• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README.md
• VERSION
• bin/clarid-tools
• cpanfile
• docker/Dockerfile
• docker/README.md
• docs/about/about.md
• docs/about/citation.md
• docs/css/theme_overrides.css
• docs/download-and-installation/docker-based.md
• docs/download-and-installation/non-containerized.md
• docs/help/faq.md
• docs/img/3tr-funding.png
• docs/img/biosample-qrcode.png
• docs/img/clarid-logo-1.png
• docs/img/clarid-logo-2.png
• docs/img/clarid-logo.png
• docs/img/cnag-logo-white.png
• docs/img/subject-qrcode.png
• docs/index.md
• docs/js/datatables-init.js
• docs/js/theme_overrides.js
• docs/js/vendor/katex.js
• docs/technical-details/codebook-and-schema.md
• docs/technical-details/implementation.md
• docs/technical-details/pre-processing-script.md
• docs/technical-details/specification.md
• docs/usage/cli-reference.md
• docs/usage/quickstart.md
• docs/use-cases/biosample.md
• docs/use-cases/subject.md
• ex/biosample.csv
• ex/biosample_to_decode.csv
• ex/subject.csv
• ex/subject_to_decode.csv
• lib/ClarID/Tools.pm
• lib/ClarID/Tools/Command/code.pm
• lib/ClarID/Tools/Command/qrcode.pm
• lib/ClarID/Tools/Command/validate.pm
• lib/ClarID/Tools/Util.pm
• lib/ClarID/Tools/Validator.pm
• makefile.install
• mkdocs.yml
• nb/data/biosample/biospecimen.project-target-aml.2025-06-29.tar.gz
• nb/data/biosample/clarid_human.csv.gz
• nb/data/biosample/clarid_stub.csv.gz
• nb/data/biosample/mapping_biosample.yaml
• nb/data/biosample/sample.tsv.gz
• nb/data/scripts/README.md
• nb/data/scripts/csv2_clarid_in.py
• nb/data/scripts/test_parse_data_unittest.py
• nb/data/subject/clarid_human.csv.gz
• nb/data/subject/clarid_stub.csv.gz
• nb/data/subject/clinical.cohort.2025-06-02.tar.gz
• nb/data/subject/clinical.tsv.gz
• nb/data/subject/mapping_subject.yaml
• non-containerized/README.md
• share/clarid-codebook-schema.json
• share/clarid-codebook.yaml
• share/icd10.json
• share/icd10_order.json
• t/bulk.t
• t/code.t
• t/data/bad_codebook.yaml
• t/data/biosample_conds.csv
• t/data/biosample_conds_to_decode.csv
• t/data/duplicate_codebook.yaml
• t/qrcode.t
• t/validate.t