Files

• .git/FETCH_HEAD
• .git/HEAD
• .git/config
• .git/description
• .git/hooks/applypatch-msg.sample
• .git/hooks/commit-msg.sample
• .git/hooks/fsmonitor-watchman.sample
• .git/hooks/post-update.sample
• .git/hooks/pre-applypatch.sample
• .git/hooks/pre-commit.sample
• .git/hooks/pre-merge-commit.sample
• .git/hooks/pre-push.sample
• .git/hooks/pre-rebase.sample
• .git/hooks/pre-receive.sample
• .git/hooks/prepare-commit-msg.sample
• .git/hooks/push-to-checkout.sample
• .git/hooks/sendemail-validate.sample
• .git/hooks/update.sample
• .git/index
• .git/info/exclude
• .git/logs/HEAD
• .git/logs/refs/heads/main
• .git/logs/refs/remotes/origin/main
• .git/objects/pack/pack-b5fcfd17bed8af5e8559d202f1ea9932cd11dbd7.idx
• .git/objects/pack/pack-b5fcfd17bed8af5e8559d202f1ea9932cd11dbd7.pack
• .git/objects/pack/pack-b5fcfd17bed8af5e8559d202f1ea9932cd11dbd7.rev
• .git/refs/heads/main
• .git/refs/remotes/origin/main
• .git/shallow
• .gitattributes
• .github/workflows/build-and-test.yml
• .github/workflows/cpan-publish.yml
• .github/workflows/docker-build.yml
• .github/workflows/documentation.yml
• .gitignore
• Changes
• Dockerfile
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile
• Makefile.PL
• bin/convert-pheno
• cpanfile
• docs/README.md
• docs/about.md
• docs/bff.md
• docs/cdisc-odm.md
• docs/citation.md
• docs/css/theme_overrides.css
• docs/download-and-installation.md
• docs/faq.md
• docs/future-plans.md
• docs/img/3tr-funding.png
• docs/img/CP-logo-grey.png
• docs/img/CP-logo.png
• docs/img/CP-text.png
• docs/img/beacon-v2-models.png
• docs/img/cnag-logo-white.png
• docs/img/cnag-logo.png
• docs/img/convert-pheno-beacon-integration.png
• docs/img/convert-pheno-gui.png
• docs/img/convert-pheno-schema.png
• docs/omop-cdm.md
• docs/pxf.md
• docs/redcap.md
• docs/redoc-static.html
• docs/supported-formats.md
• docs/tutorial.md
• docs/use-as-a-command-line-interface.md
• docs/use-as-a-module.md
• docs/use-as-an-api.md
• docs/web-app-user-interface.md
• docs/what-is-convert-pheno.md
• lib/Convert/Pheno.pm
• lib/Convert/Pheno/BFF.pm
• lib/Convert/Pheno/CDISC.pm
• lib/Convert/Pheno/CSV.pm
• lib/Convert/Pheno/IO.pm
• lib/Convert/Pheno/Mapping.pm
• lib/Convert/Pheno/OMOP.pm
• lib/Convert/Pheno/PXF.pm
• lib/Convert/Pheno/REDCap.pm
• lib/Convert/Pheno/SQLite.pm
• lib/Convert/Pheno/Schema.pm
• lib/convertpheno.py
• makefile.docker
• makefile.install
• mkdocs.yml
• share/api/perl/README.md
• share/api/perl/bigdata.json
• share/api/perl/convert-pheno-api
• share/api/perl/data.json
• share/api/perl/omop.json
• share/api/perl/openapi.json
• share/api/perl/t/mojo.t
• share/api/perl/t/simplest.t
• share/api/python/README.md
• share/api/python/data.json
• share/api/python/main.py
• share/db/README
• share/db/cdisc.db
• share/db/concepts_candidates_2_exposure.csv
• share/db/icd10.db
• share/db/ncit.db
• share/ex/README
• share/ex/perl.pl
• share/ex/pyperler/.travis.yml
• share/ex/pyperler/COPYING
• share/ex/pyperler/Makefile
• share/ex/pyperler/PythonObjectPm.pyx
• share/ex/pyperler/README.md
• share/ex/pyperler/VERSION
• share/ex/pyperler/callbacks.pyx
• share/ex/pyperler/dlfcn.pxd
• share/ex/pyperler/macrocompat.h
• share/ex/pyperler/perl.pxd
• share/ex/pyperler/perllib/Car.pm
• share/ex/pyperler/perllib/DummyIterable.pm
• share/ex/pyperler/pyperler.h
• share/ex/pyperler/pyperler.pyx
• share/ex/pyperler/pyperler_extra.c
• share/ex/pyperler/setup.py
• share/ex/pyperler/test.py
• share/ex/python.py
• share/schema/mapping.json
• t/args.t
• t/bff2pxf/in/individuals.json
• t/bff2pxf/out/pxf.json
• t/cdisc2bff/in/cdisc_odm_data.xml
• t/cdisc2bff/in/cdisc_odm_dictionary.csv
• t/cdisc2bff/in/cdisc_odm_mapping.yaml
• t/cdisc2bff/out/individuals.json
• t/cdisc2pxf/out/pxf.json
• t/cli.t
• t/mapping.t
• t/module.t
• t/ohdsi.t
• t/omop2bff/in/CONCEPT.csv
• t/omop2bff/in/MEASUREMENT.csv
• t/omop2bff/in/PERSON.csv
• t/omop2bff/in/gz/CONCEPT.csv.gz
• t/omop2bff/in/gz/MEASUREMENT.csv.gz
• t/omop2bff/in/gz/PERSON.csv.gz
• t/omop2bff/in/gz/omop_cdm_eunomia.sql.gz
• t/omop2bff/in/omop_cdm_eunomia.sql
• t/omop2bff/out/individuals.json
• t/omop2bff/out/individuals_csv.json.gz
• t/omop2bff/out/individuals_drug_exposure.json.gz
• t/omop2bff/out/ohdsi.json
• t/omop2pxf/out/pxf.json
• t/pxf2bff/in/pxf.json
• t/pxf2bff/out/individuals.json
• t/redcap2bff/err/redcap_mapping_err1.yaml
• t/redcap2bff/err/redcap_mapping_err2.yaml
• t/redcap2bff/err/redcap_mapping_err3.yaml
• t/redcap2bff/err/redcap_mapping_err4.yaml
• t/redcap2bff/err/redcap_mapping_err5.yaml
• t/redcap2bff/in/redcap_data.csv
• t/redcap2bff/in/redcap_dictionary.csv
• t/redcap2bff/in/redcap_mapping.yaml
• t/redcap2bff/out/individuals.json
• t/redcap2pxf/out/pxf.json
• t/schema/malformed.json
• t/stream.t