Convert-Pheno 0.30 Latest
Files
- .gitattributes
- .gitignore
- CITATION.cff
- Changes
- LICENSE
- MANIFEST
- META.json
- META.yml
- Makefile.PL
- VERSION
- bin/convert-pheno
- cpanfile
- docker/Dockerfile
- docker/README.md
- lib/Convert/Pheno.pm
- lib/Convert/Pheno/BFF/DerivedEntities.pm
- lib/Convert/Pheno/BFF/ToOMOP.pm
- lib/Convert/Pheno/BFF/ToPXF.pm
- lib/Convert/Pheno/CDISC.pm
- lib/Convert/Pheno/CLI/Args.pm
- lib/Convert/Pheno/CSV.pm
- lib/Convert/Pheno/Context.pm
- lib/Convert/Pheno/DB/SQLite.pm
- lib/Convert/Pheno/DB/Similarity.pm
- lib/Convert/Pheno/Emit/OMOP.pm
- lib/Convert/Pheno/IO/CSVHandler.pm
- lib/Convert/Pheno/IO/FileIO.pm
- lib/Convert/Pheno/JSONLD.pm
- lib/Convert/Pheno/Mapping/BFF/Individuals/Tabular.pm
- lib/Convert/Pheno/Mapping/Shared.pm
- lib/Convert/Pheno/Model/Bundle.pm
- lib/Convert/Pheno/OMOP/Definitions.pm
- lib/Convert/Pheno/OMOP/ParticipantStream.pm
- lib/Convert/Pheno/OMOP/Source.pm
- lib/Convert/Pheno/OMOP/ToBFF.pm
- lib/Convert/Pheno/OMOP/ToBFF/Biosamples.pm
- lib/Convert/Pheno/OMOP/ToBFF/Individuals.pm
- lib/Convert/Pheno/PXF/ToBFF.pm
- lib/Convert/Pheno/PXF/ToBFF/Biosamples.pm
- lib/Convert/Pheno/PXF/ToBFF/Individuals.pm
- lib/Convert/Pheno/REDCap.pm
- lib/Convert/Pheno/Runner.pm
- lib/Convert/Pheno/Tabular/REDCap/Dictionary.pm
- lib/Convert/Pheno/Tabular/Record.pm
- lib/Convert/Pheno/Utils/Default.pm
- lib/Convert/Pheno/Utils/Schema.pm
- lib/convertpheno.py
- mkdocs.yml
- non-containerized/README.md
- share/db/README
- share/db/cdisc.db
- share/db/concepts_candidates_2_exposure.csv
- share/db/hpo.db
- share/db/icd10.db
- share/db/ncit.db
- share/db/omim.db
- share/ex/perl.pl
- share/ex/python.py
- share/schema/mapping.json
- t/00-load.t
- t/01-api-bff-pxf.t
- t/02-api-tabular.t
- t/03-api-omop.t
- t/04-api-stream-omop.t
- t/05-errors.t
- t/06-mapping-errors.t
- t/07-api-bff-omop.t
- t/08-jsonld.t
- t/09-pxf-behavior.t
- t/10-bff2omop-behavior.t
- t/11-mapping-utils.t
- t/12-db-similarity.t
- t/13-db-sqlite.t
- t/14-csvhandler-utils.t
- t/15-convertpheno-orchestration.t
- t/16-omop-behavior.t
- t/17-context-bundle.t
- t/18-cli-entities.t
- t/19-cli-regression.t
- t/20-cli-stream-omop.t
- t/21-search-audit.t
- t/22-fileio-gzip.t
- t/23-cli-help.t
- t/24-tabular-raw-values.t
- t/bff2csv/out/individuals.csv
- t/bff2jsonf/out/individuals.fold.json
- t/bff2omop/in/individuals.json
- t/bff2omop/out/eunomia_CONDITION_OCCURRENCE.csv
- t/bff2omop/out/eunomia_OBSERVATION.csv
- t/bff2omop/out/eunomia_PERSON.csv
- t/bff2omop/out/eunomia_PROCEDURE_OCCURRENCE.csv
- t/bff2pxf/in/README
- t/bff2pxf/in/individuals.json
- t/bff2pxf/out/pxf.json
- t/cdisc2bff/in/README
- t/cdisc2bff/in/cdisc_odm_data.xml
- t/cdisc2bff/in/cdisc_odm_dictionary.csv
- t/cdisc2bff/out/individuals.json
- t/cdisc2pxf/out/pxf.json
- t/csv2bff/in/csv_data.csv
- t/csv2bff/in/csv_mapping.yaml
- t/csv2bff/out/individuals.json
- t/csv2omop/out/csv_CONDITION_OCCURRENCE.csv
- t/csv2omop/out/csv_DRUG_EXPOSURE.csv
- t/csv2omop/out/csv_MEASUREMENT.csv
- t/csv2omop/out/csv_OBSERVATION.csv
- t/csv2omop/out/csv_PERSON.csv
- t/csv2pxf/out/pxf.json
- t/lib/Test/ConvertPheno.pm
- t/omop2bff/in/CONCEPT.csv
- t/omop2bff/in/DRUG_EXPOSURE.csv
- t/omop2bff/in/PERSON.csv
- t/omop2bff/in/README.md
- t/omop2bff/in/gz/CONCEPT.csv.gz
- t/omop2bff/in/gz/DRUG_EXPOSURE.csv.gz
- t/omop2bff/in/gz/PERSON.csv.gz
- t/omop2bff/in/gz/omop_cdm_eunomia.sql.gz
- t/omop2bff/in/omop_cdm_eunomia.sql
- t/omop2bff/out/individuals.json
- t/omop2bff/out/individuals_csv.json
- t/omop2bff/out/individuals_csv.json.gz
- t/omop2bff/out/individuals_drug_exposure.json.gz
- t/omop2bff/out/ohdsi.json
- t/omop2pxf/out/pxf.json
- t/pxf2bff/in/README
- t/pxf2bff/in/pxf.json
- t/pxf2bff/in/pxf.yaml
- t/pxf2bff/in/pxf_biosamples.json
- t/pxf2bff/out/biosamples.json
- t/pxf2bff/out/individuals.json
- t/pxf2bff/out/individuals.yaml
- t/pxf2csv/out/pxf.csv
- t/pxf2jsonf/out/pxf.fold.json
- t/redcap2bff/err/redcap_mapping_err1.yaml
- t/redcap2bff/err/redcap_mapping_err2.yaml
- t/redcap2bff/err/redcap_mapping_err3.yaml
- t/redcap2bff/err/redcap_mapping_err4.yaml
- t/redcap2bff/err/redcap_mapping_err5.yaml
- t/redcap2bff/in/file.tsv
- t/redcap2bff/in/redcap_data.csv
- t/redcap2bff/in/redcap_dictionary.csv
- t/redcap2bff/in/redcap_mapping.yaml
- t/redcap2bff/out/individuals.json
- t/redcap2pxf/out/pxf.json
- t/schema/malformed.json
- xt/bff2omop.t
- xt/csv2omop.t
- xt/ohdsi.t
- xt/protobuff.t