Files

• .gitattributes
• .gitignore
• Changes
• Dockerfile
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• VERSION
• bin/pheno-ranker
• cpanfile
• lib/Pheno/Ranker.pm
• lib/Pheno/Ranker/Align.pm
• lib/Pheno/Ranker/Graph.pm
• lib/Pheno/Ranker/IO.pm
• lib/Pheno/Ranker/Stats.pm
• mkdocs.yml
• requirements.txt
• share/conf/config.yaml
• share/db/hp.json
• share/ex/individuals_random_100.json
• share/ex/movies.json
• share/ex/movies_config.yaml
• share/ex/pxf_random_100.json
• share/ex/weights.yaml
• share/fig/README.md
• share/fig/weights_fig4.yaml
• share/fig/weights_sex.yaml
• share/fig/weights_sex_treatments.yaml
• share/r/heatmap.R
• share/r/heatmap_scale.R
• share/r/mds.R
• share/r/mds_color.R
• share/r/pheno_anova_code.R
• t/cars.json
• t/cars_config.yaml
• t/cars_matrix.txt
• t/cli.t
• t/csv.t
• t/die.t
• t/example.csv
• t/example_config_ref.yaml
• t/example_ref.json
• t/export.glob_hash.json
• t/export.ref_binary_hash.json
• t/graph.json
• t/graph.t
• t/graph_stats.txt
• t/individuals.json
• t/individuals_random_100.json
• t/individuals_random_100_ontologies.json
• t/inter_cohort_matrix_ref.txt
• t/interpretations_pxf.json
• t/json.t
• t/matrix_ref.txt
• t/matrix_ref_interpretations_pxf.txt
• t/matrix_ref_jaccard.txt
• t/matrix_ref_weights_zero.txt
• t/movies.json
• t/movies_config.yaml
• t/movies_weights.yaml
• t/ontologies.yaml
• t/output.json
• t/patient.json
• t/plot/bff.png
• t/plot/pxf.png
• t/pxf_random_100.json
• t/qr_codes/107_week_0_arm_1.compressed.png
• t/qr_codes/107_week_0_arm_1.pdf
• t/qr_codes/107_week_0_arm_1.png
• t/qr_codes/output.json
• t/rank_ref_sorted.txt
• t/rank_weight_ref_sorted.txt
• t/ref_align.csv
• t/ref_align.target.csv
• t/ref_align.txt
• t/ref_movies_include_matrix.txt
• t/ref_movies_matrix.txt
• t/ref_movies_weights_matrix.txt
• t/sim.t
• t/weights.t
• t/weights.yaml
• t/weights_err1.yaml
• t/weights_err2.yaml
• t/weights_zero.yaml
• utils/bff_pxf_simulator/Ontologies.pm
• utils/bff_pxf_simulator/README.md
• utils/bff_pxf_simulator/bff-pxf-simulator
• utils/bff_pxf_simulator/cpanfile
• utils/bff_pxf_simulator/ontologies.yaml
• utils/bff_pxf_simulator/pm2yaml.pl
• utils/csv2pheno_ranker/README.md
• utils/csv2pheno_ranker/cpanfile
• utils/csv2pheno_ranker/csv2pheno-ranker
• utils/csv2pheno_ranker/vcf/vcf2pheno-ranker.py