Files

• .gitattributes
• .gitignore
• Changes
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• VERSION
• bin/pheno-ranker
• cpanfile
• docker/Dockerfile
• docker/README.md
• examples/quickstart/README.md
• examples/quickstart/individuals.json
• examples/quickstart/patient.json
• lib/Pheno/Ranker.pm
• lib/Pheno/Ranker/CLI.pm
• lib/Pheno/Ranker/Compare.pm
• lib/Pheno/Ranker/Compare/Alignment.pm
• lib/Pheno/Ranker/Compare/Encoding.pm
• lib/Pheno/Ranker/Compare/Matrix.pm
• lib/Pheno/Ranker/Compare/Ontology.pm
• lib/Pheno/Ranker/Compare/Prepare.pm
• lib/Pheno/Ranker/Compare/Prune.pm
• lib/Pheno/Ranker/Compare/Rank.pm
• lib/Pheno/Ranker/Compare/Remap.pm
• lib/Pheno/Ranker/Config.pm
• lib/Pheno/Ranker/Context.pm
• lib/Pheno/Ranker/Graph.pm
• lib/Pheno/Ranker/IO.pm
• lib/Pheno/Ranker/Metrics.pm
• lib/Pheno/Ranker/Options.pm
• lib/Pheno/Ranker/Version.pm
• non-containerized/README.md
• requirements.txt
• share/conf/config.yaml
• share/db/README.md
• share/db/hp.json
• share/diseases/hpo/README.md
• share/diseases/hpo/omim.bff.json.gz
• share/diseases/hpo/omim.pxf.json.gz
• share/diseases/hpo/orpha.bff.json.gz
• share/diseases/hpo/orpha.pxf.json.gz
• share/diseases/hpo/scripts/hpo_disease_converter.pl
• t/00-modules.t
• t/01-ranker.t
• t/02-json-ranking.t
• t/03-graph-cli.t
• t/04-errors.t
• t/05-weights.t
• t/06-csv2pheno-ranker.t
• t/07-bff-pxf-simulator.t
• t/09-cli.t
• t/10-precomputed-labels.t
• t/data/cars.json
• t/data/cars_config.yaml
• t/data/cars_matrix.txt
• t/data/example.csv
• t/data/example_config_ref.yaml
• t/data/example_ref.json
• t/data/export.coverage_stats.json
• t/data/export.glob_hash.json
• t/data/export.ref_binary_hash.json
• t/data/export.ref_hash.json
• t/data/graph.json
• t/data/graph_stats.txt
• t/data/individuals.json
• t/data/individuals.json.gz
• t/data/individuals_random_100.json
• t/data/individuals_random_100_ontologies.json
• t/data/inter_cohort_matrix_ref.txt
• t/data/interpretations_pxf.json
• t/data/matrix_ref.txt
• t/data/matrix_ref_interpretations_pxf.txt
• t/data/matrix_ref_jaccard.txt
• t/data/matrix_ref_weights_zero.txt
• t/data/movies.json
• t/data/movies_config.yaml
• t/data/movies_weights.yaml
• t/data/ontologies.yaml
• t/data/output.json
• t/data/patient.json
• t/data/pxf_excluded_true.json
• t/data/pxf_excluded_true_matrix.txt
• t/data/pxf_random_100.json
• t/data/qr_codes/107_week_0_arm_1.compressed.png
• t/data/qr_codes/107_week_0_arm_1.pdf
• t/data/qr_codes/107_week_0_arm_1.png
• t/data/qr_codes/output.compressed.json
• t/data/qr_codes/output.json
• t/data/rank.txt
• t/data/ref_align.csv
• t/data/ref_align.target.csv
• t/data/ref_align.txt
• t/data/ref_movies_include_matrix.txt
• t/data/ref_movies_matrix.txt
• t/data/ref_movies_weights_matrix.txt
• t/data/weights.yaml
• t/data/weights_err1.yaml
• t/data/weights_err2.yaml
• t/data/weights_zero.yaml
• t/lib/Test/PhenoRanker.pm
• utils/bff_pxf_simulator/Ontologies.pm
• utils/bff_pxf_simulator/bff-pxf-simulator
• utils/csv2pheno_ranker/csv2pheno-ranker