Bio-ViennaNGS v0.16
- Released by
- MTW
- Version
- Release Date
- 2015-10-28
- Kwalitee
- 150
- Core Kwalitee
- 93.75
- LINKS
Bio-ViennaNGS v0.16 Deleted
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::ViennaNGS
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-ViennaNGS-v0.16/scripts/Tutorial_pipeline03.pl -- Around line 173: You forgot a '=back' before '=head1'
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::ViennaNGS
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
- meta_yml_has_repository_resource
-
Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
- has_separate_license_file
-
This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::ViennaNGS | A Perl distribution for Next-Generation Sequencing (NGS) data analysis | 0.016000 | metacpan |
| Bio::ViennaNGS::AnnoC | Object-oriented interface for storing and converting biological sequence annotation formats | 0.016000 | metacpan |
| Bio::ViennaNGS::Bam | High-level access to BAM files | 0.016000 | metacpan |
| Bio::ViennaNGS::BamStat | Moose interface to BAM mapping statistics | 0.016000 | metacpan |
| Bio::ViennaNGS::BamStatSummary | Moose interface for analyzing, summarizing and comparing BAM mapping statistics produced by L<Bio::ViennaNGS::BamStat> | 0.016000 | metacpan |
| Bio::ViennaNGS::Bed | Object-oriented interface for manipulation of genomic interval data in BED format | 0.016000 | metacpan |
| Bio::ViennaNGS::BedGraphEntry | 0.016000 | metacpan | |
| Bio::ViennaNGS::Expression | An object oriented interface for computing read-count based gene expression as TPM or RPKM | 0.016000 | metacpan |
| Bio::ViennaNGS::ExtFeature | A Moose wrapper for extended BED6-type genomic intervals. | 0.016000 | metacpan |
| Bio::ViennaNGS::Fasta | Moose wrapper for Bio::DB::Fasta | 0.016000 | metacpan |
| Bio::ViennaNGS::Feature | A Moose wrapper for BED6-type genomic intervals. | 0.016000 | metacpan |
| Bio::ViennaNGS::FeatureChain | 0.016000 | metacpan | |
| Bio::ViennaNGS::FeatureIO | Versatile I/O interface for Bio::ViennaNGS feature annotation classes | metacpan | |
| Bio::ViennaNGS::FeatureInterval | A Moose class for unstranded, elementary genomic intervals. | 0.016000 | metacpan |
| Bio::ViennaNGS::FeatureLine | 0.016000 | metacpan | |
| Bio::ViennaNGS::MinimalFeature | A Moose wrapper for stranded genomic intervals. | 0.016000 | metacpan |
| Bio::ViennaNGS::Peak | An object oriented interface for characterizing peaks in RNA-seq data | 0.016000 | metacpan |
| Bio::ViennaNGS::SpliceJunc | Perl extension for alternative splicing analysis | 0.016000 | metacpan |
| Bio::ViennaNGS::Tutorial | A collection of basic tutorials demonstrating of the core components and features of the L<Bio::ViennaNGS> suite | 0.016000 | metacpan |
| Bio::ViennaNGS::UCSC | Perl extension for easy UCSC Genome Browser integration. | 0.016000 | metacpan |
| Bio::ViennaNGS::Util | Utility routines for Next-Generation Sequencing data analysis | 0.016000 | metacpan |