Files

• AUTHORS
• Changes
• Doxyfile
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README
• inc/File/ShareDir/Install.pm
• lib/Bio/ViennaNGS.pm
• lib/Bio/ViennaNGS/AnnoC.pm
• lib/Bio/ViennaNGS/Bam.pm
• lib/Bio/ViennaNGS/BamStat.pm
• lib/Bio/ViennaNGS/BamStatSummary.pm
• lib/Bio/ViennaNGS/Bed.pm
• lib/Bio/ViennaNGS/BedGraphEntry.pm
• lib/Bio/ViennaNGS/Expression.pm
• lib/Bio/ViennaNGS/ExtFeature.pm
• lib/Bio/ViennaNGS/Fasta.pm
• lib/Bio/ViennaNGS/Feature.pm
• lib/Bio/ViennaNGS/FeatureChain.pm
• lib/Bio/ViennaNGS/FeatureIO.pm
• lib/Bio/ViennaNGS/FeatureInterval.pm
• lib/Bio/ViennaNGS/FeatureLine.pm
• lib/Bio/ViennaNGS/MinimalFeature.pm
• lib/Bio/ViennaNGS/Peak.pm
• lib/Bio/ViennaNGS/SpliceJunc.pm
• lib/Bio/ViennaNGS/Tutorial.pm
• lib/Bio/ViennaNGS/UCSC.pm
• lib/Bio/ViennaNGS/Util.pm
• scripts/MEME_xml_motif_extractor.pl
• scripts/Tutorial_pipeline00.pl
• scripts/Tutorial_pipeline01.pl
• scripts/Tutorial_pipeline02.pl
• scripts/Tutorial_pipeline03.pl
• scripts/assembly_hub_constructor.pl
• scripts/bam_quality_stat.pl
• scripts/bam_split.pl
• scripts/bam_to_bigwig.pl
• scripts/bam_uniq.pl
• scripts/bed2bedGraph.pl
• scripts/bed2nt2aa.pl
• scripts/extend_bed.pl
• scripts/gff2bed.pl
• scripts/kmer_analysis.pl
• scripts/newUCSCdb.pl
• scripts/normalize_multicov.pl
• scripts/rnaseq_peakfinder.pl
• scripts/sj_visualizer.pl
• scripts/splice_site_summary.pl
• scripts/track_hub_constructor.pl
• scripts/trim_fastq.pl
• share/data1/NC_000913.3.30k.fa
• share/data1/NC_000913.3.30k.gff
• share/data1/NC_000913.3.chrom.sizes
• share/data1/NC_000913.CDS.bed
• share/data1/SRR794848.8k.bam
• share/data2/MIOS.bed12
• share/data2/MIOS_sj.bed
• share/template-AssemblyHub/description.html
• share/template-AssemblyHub/genome.txt
• share/template-AssemblyHub/groups.txt
• share/template-AssemblyHub/hub.txt
• share/template-AssemblyHub/trackDb.txt
• share/template-TrackHub/description.html
• share/template-TrackHub/genome.txt
• share/template-TrackHub/hub.txt
• share/template-TrackHub/trackDb.txt
• t/01-basics.t
• t/02-thirdparty.t
• t/04-UCSC-TrackHub.t
• t/05-UCSC-AssemblyHub.t
• t/06-SpliceJunc.t