Bio-AutomatedAnnotation 1.182770
- Released by
- VOFFFORD
- Version
- Release Date
- 2018-10-04
- Kwalitee
- 140.62
- Core Kwalitee
- 93.75
- LINKS
Bio-AutomatedAnnotation 1.182770 Latest
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::AutomatedAnnotation::Exceptions
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::AutomatedAnnotation::Exceptions
- no_unauthorized_packages
-
Ask the owner of the distribution (the one who released it first, or the one who is designated in x_authority) to give you a (co-)maintainer's permission.
Error:
- Bio::AutomatedAnnotation::Prokka
- no_invalid_versions
-
Fix the version numbers so that version::is_lax($version) returns true.
Error:
- lib/Bio/AutomatedAnnotation/Prokka.pm: HASH(0x55a43f6888f0)
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::AutomatedAnnotation | Automated annotation of assemblies | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::CommandLine::AnnotateBacteria | provide a commandline interface to the annotation wrappers | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::CommandLine::GeneNameOccurances | Create a spreadsheet with gene name occurances | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::CommandLine::ParseGenesFromGFFs | provide a commandline interface to pull out genes from multiple GFF files | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::Exceptions | Exceptions for input data | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::External::Cmscan | Run and parse the output of cmscan | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::GeneNameOccurances | Parse the gene names from multiple GFF files and provide a matrix of matches. | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::GeneNamesFromGFF | Parse a GFF and efficiently extract out the Gene Names | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::ParseGenesFromGFF | Parse a GFF file and efficiency extract the gene sequence. | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::ParseGenesFromGFFs | Parse GFF files and efficiency extract the gene sequence. | 1.182770 | metacpan |
| Bio::AutomatedAnnotation::Prokka | Prokka class for bacterial annotation | metacpan | |
| Bio::AutomatedAnnotation::SpreadsheetOfGeneOccurances | Output a spreadsheet with the gene occurances per file | 1.182770 | metacpan |