Files

• AUTHORS
• GPL-LICENSE
• LICENSE
• MANIFEST
• META.json
• META.yml
• Makefile.PL
• README
• README.md
• bin/annotate_bacteria
• bin/gene_name_occurances
• bin/parse_genes_from_gffs
• dist.ini
• install_dependencies.sh
• lib/Bio/AutomatedAnnotation.pm
• lib/Bio/AutomatedAnnotation/CommandLine/AnnotateBacteria.pm
• lib/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.pm
• lib/Bio/AutomatedAnnotation/CommandLine/ParseGenesFromGFFs.pm
• lib/Bio/AutomatedAnnotation/Exceptions.pm
• lib/Bio/AutomatedAnnotation/External/Cmscan.pm
• lib/Bio/AutomatedAnnotation/GeneNameOccurances.pm
• lib/Bio/AutomatedAnnotation/GeneNamesFromGFF.pm
• lib/Bio/AutomatedAnnotation/ParseGenesFromGFF.pm
• lib/Bio/AutomatedAnnotation/ParseGenesFromGFFs.pm
• lib/Bio/AutomatedAnnotation/Prokka.pm
• lib/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.pm
• lib/Bio/AutomatedAnnotation/notes
• t/Bio/AutomatedAnnotation.t
• t/Bio/AutomatedAnnotation/CommandLine/GeneNameOccurances.t
• t/Bio/AutomatedAnnotation/CommandLine/ParseGenesFromGFFs.t
• t/Bio/AutomatedAnnotation/External/Cmscan.t
• t/Bio/AutomatedAnnotation/GeneNameOccurances.t
• t/Bio/AutomatedAnnotation/GeneNamesFromGFF.t
• t/Bio/AutomatedAnnotation/ParseGenesFromGFF.t
• t/Bio/AutomatedAnnotation/ParseGenesFromGFFs.t
• t/Bio/AutomatedAnnotation/Prokka.t
• t/Bio/AutomatedAnnotation/SpreadsheetOfGeneOccurances.t
• t/Bio/SearchIOhmm.t
• t/bin/dummy_cmscan
• t/data/blast_results.out
• t/data/cmscan_output.txt
• t/data/copy_of_example_annotation.gff
• t/data/different_to_example_annotation.gff
• t/data/empty_annotation.gff
• t/data/example_annotation.gff
• t/data/expected_aa_output.yfnB.fa
• t/data/expected_example.csv
• t/data/expected_gene_occurances_output_all_files.csv
• t/data/expected_gene_occurances_output_one_file.csv
• t/data/expected_gene_occurances_output_two_files.csv
• t/data/expected_output.16SribosomalRNA.fa
• t/data/expected_output.hypothetical.fa
• t/data/expected_output.yfnB.fa
• t/data/hmmscan_no_hits.out
• t/data/minimal_contigs.fa
• t/lib/TestHelper.pm
• t/requires_external.t