Bio-ToolBox 2.01
- Released by
- TJPARNELL
- Version
- Release Date
- 2024-10-31
- Kwalitee
- 150
- Core Kwalitee
- 100
- LINKS
Bio-ToolBox 2.01 Latest
Kwalitee Issues
No Core Issues.
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::ToolBox::db_helper::constants
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 2.00,2.01
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::ToolBox | Tools for querying and analysis of genomic data | 2.01 | metacpan |
| Bio::ToolBox::Data | Reading, writing, and manipulating data structure | 2.01 | metacpan |
| Bio::ToolBox::Data::Feature | Objects representing rows in a data table | 2.00 | metacpan |
| Bio::ToolBox::Data::Iterator | Class for iterating through Data tables | 2.00 | metacpan |
| Bio::ToolBox::Data::Stream | Read, Write, and Manipulate Data File Line by Line | 2.00 | metacpan |
| Bio::ToolBox::Data::core | Common functions to Bio:ToolBox::Data family | 2.00 | metacpan |
| Bio::ToolBox::Data::file | File functions to Bio:ToolBox::Data family | 2.01 | metacpan |
| Bio::ToolBox::GeneTools | SeqFeature agnostic methods for working with gene models | 2.00 | metacpan |
| Bio::ToolBox::Parser | generic parsing tool for GFF, UCSC, BED | 2.00 | metacpan |
| Bio::ToolBox::Parser::bed | Parser for BED-style formats | 2.00 | metacpan |
| Bio::ToolBox::Parser::gff | parse GFF3, GTF, and generic GFF files | 2.01 | metacpan |
| Bio::ToolBox::Parser::ucsc | Parser for UCSC genePred, refFlat, etc formats | 2.00 | metacpan |
| Bio::ToolBox::Parser::ucsc::builder | Build gene and transcript SeqFeatures from UCSC formats | 2.00 | metacpan |
| Bio::ToolBox::SeqFeature | Fast, simple SeqFeature implementation | 2.00 | metacpan |
| Bio::ToolBox::big_helper | 2.00 | metacpan | |
| Bio::ToolBox::db_helper | helper interface to various database formats | 2.00 | metacpan |
| Bio::ToolBox::db_helper::alignment_callbacks | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::bam | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::big | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::big::BedIteratorWrapper | metacpan | ||
| Bio::ToolBox::db_helper::big::BigWigSet | metacpan | ||
| Bio::ToolBox::db_helper::bigbed | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::bigwig | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::config | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::constants | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::hts | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::seqfasta | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::useq | 2.00 | metacpan | |
| Bio::ToolBox::db_helper::wiggle | 2.00 | metacpan | |
| Bio::ToolBox::utility | common utility functions for Bio::ToolBox | 2.01 | metacpan |