Bio-ToolBox 2.01
- Released by
- TJPARNELL
- Version
- Release Date
- 2024-10-31
- Kwalitee
- 150
- Core Kwalitee
- 100
- LINKS
Bio-ToolBox 2.01 Latest
Files
- Build.PL
- CHANGES
- LICENSE
- MANIFEST
- META.json
- META.yml
- README
- lib/Bio/ToolBox.pm
- lib/Bio/ToolBox/Data.pm
- lib/Bio/ToolBox/Data/Feature.pm
- lib/Bio/ToolBox/Data/Iterator.pm
- lib/Bio/ToolBox/Data/Stream.pm
- lib/Bio/ToolBox/Data/core.pm
- lib/Bio/ToolBox/Data/file.pm
- lib/Bio/ToolBox/GeneTools.pm
- lib/Bio/ToolBox/Parser.pm
- lib/Bio/ToolBox/Parser/bed.pm
- lib/Bio/ToolBox/Parser/gff.pm
- lib/Bio/ToolBox/Parser/ucsc.pm
- lib/Bio/ToolBox/Parser/ucsc/builder.pm
- lib/Bio/ToolBox/SeqFeature.pm
- lib/Bio/ToolBox/big_helper.pm
- lib/Bio/ToolBox/db_helper.pm
- lib/Bio/ToolBox/db_helper/alignment_callbacks.pm
- lib/Bio/ToolBox/db_helper/bam.pm
- lib/Bio/ToolBox/db_helper/big.pm
- lib/Bio/ToolBox/db_helper/bigbed.pm
- lib/Bio/ToolBox/db_helper/bigwig.pm
- lib/Bio/ToolBox/db_helper/config.pm
- lib/Bio/ToolBox/db_helper/constants.pm
- lib/Bio/ToolBox/db_helper/hts.pm
- lib/Bio/ToolBox/db_helper/seqfasta.pm
- lib/Bio/ToolBox/db_helper/useq.pm
- lib/Bio/ToolBox/db_helper/wiggle.pm
- lib/Bio/ToolBox/utility.pm
- scripts/bam2wig.pl
- scripts/correlate_position_data.pl
- scripts/data2bed.pl
- scripts/data2fasta.pl
- scripts/data2gff.pl
- scripts/data2wig.pl
- scripts/db_setup.pl
- scripts/db_types.pl
- scripts/get_binned_data.pl
- scripts/get_datasets.pl
- scripts/get_feature_info.pl
- scripts/get_features.pl
- scripts/get_gene_regions.pl
- scripts/get_intersecting_features.pl
- scripts/get_relative_data.pl
- scripts/join_data_file.pl
- scripts/manipulate_datasets.pl
- scripts/manipulate_wig.pl
- scripts/merge_datasets.pl
- scripts/pull_features.pl
- scripts/split_data_file.pl
- scripts/ucsc_table2gff3.pl
- t/00.utility.t
- t/01.Data.t
- t/02.parser.t
- t/03.GeneTools.t
- t/04.DB.t
- t/05.Bam-HTS.t
- t/05.Bam-Samtools.t
- t/06.BigBed-UCSC.t
- t/06.BigBed-big.t
- t/07.BigWig-UCSC.t
- t/07.BigWig-big.t
- t/08.BigWigSet-UCSC.t
- t/08.BigWigSet-big.t
- t/09.USeq.t
- t/10.Wiggle.t
- t/Data/H3K27ac.bed
- t/Data/H3K4me3.narrowPeak
- t/Data/biotoolbox.cfg
- t/Data/chrI.gff3
- t/Data/ensGene.bed
- t/Data/ensGene.gtf
- t/Data/ensGene.txt
- t/Data/ensemblSource.txt
- t/Data/ensemblToGeneName.txt
- t/Data/sample.bed
- t/Data/sample1.bam
- t/Data/sample1.bam.bai
- t/Data/sample1.bb
- t/Data/sample2.bw
- t/Data/sample2.gff3
- t/Data/sample2.wib
- t/Data/sample3.useq
- t/Data/sample3/metadata.txt
- t/Data/sample3/sample3_f.bw
- t/Data/sample3/sample3_r.bw
- t/Data/sequence.fa