CPANTS

InSilicoSpectro 1.3.24 Latest

Kwalitee Issues

Add a MANIFEST to the distribution. Your buildtool should be able to autogenerate it (eg "make manifest" or "./Build manifest")

has_changelog

Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.

buildtool_not_executable

Change the permissions of Build.PL/Makefile.PL to not-executable.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error: Cannot find MANIFEST in dist.

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: InSilicoSpectro-1.3.24/cgi/DefEnv.pm -- Around line 14: Unknown directive: =FUNCTIONS InSilicoSpectro-1.3.24/lib/InSilicoSpectro/InSilico/AASequence.pm -- Around line 64: Expected text after =item, not a bullet InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilter.pm -- Around line 115: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterAlgorithm.pm -- Around line 48: '=item' outside of any '=over' Around line 52: You forgot a '=back' before '=head1' Around line 133: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterCollection.pm -- Around line 67: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/Filter/MSFilterDirectValue.pm -- Around line 116: You forgot a '=back' before '=head1' InSilicoSpectro-1.3.24/lib/InSilicoSpectro/Spectra/PhenyxPeakDescriptor.pm -- Around line 54: You forgot a '=back' before '=head1'

3 Extra Issues

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: InSilicoSpectro, InSilicoSpectro::InSilico::AASequence, InSilicoSpectro::InSilico::CleavEnzyme, InSilicoSpectro::InSilico::ExpCalibrator, InSilicoSpectro::InSilico::InternIonSeries, InSilicoSpectro::InSilico::IonSeries, InSilicoSpectro::InSilico::IsoelPoint, InSilicoSpectro::InSilico::MSMSOutput, InSilicoSpectro::InSilico::MSMSTheoSpectrum, InSilicoSpectro::InSilico::MassCalculator, InSilicoSpectro::InSilico::ModRes, InSilicoSpectro::InSilico::PMFMatch, InSilicoSpectro::InSilico::Peptide, InSilicoSpectro::InSilico::RetentionTimer, InSilicoSpectro::InSilico::RetentionTimer::Hodges, InSilicoSpectro::InSilico::RetentionTimer::Petritis, InSilicoSpectro::InSilico::Sequence, InSilicoSpectro::InSilico::TermIonSeries, InSilicoSpectro::Spectra::ExpSpectrum, InSilicoSpectro::Spectra::Filter::MSFilter, InSilicoSpectro::Spectra::Filter::MSFilterAlgorithm, InSilicoSpectro::Spectra::Filter::MSFilterCollection, InSilicoSpectro::Spectra::Filter::MSFilterDirectValue, InSilicoSpectro::Spectra::MSMSCmpd, InSilicoSpectro::Spectra::MSMSSpectra, InSilicoSpectro::Spectra::MSRun, InSilicoSpectro::Spectra::MSSpectra, InSilicoSpectro::Spectra::PeakDescriptor, InSilicoSpectro::Spectra::PhenyxPeakDescriptor, InSilicoSpectro::Utils::FileCached, InSilicoSpectro::Utils::Files, InSilicoSpectro::Utils::XML::SaxIndexMaker, InSilicoSpectro::Utils::io

consistent_version

Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).

Error: 0.9,1.3.24

2 Experimental Issues

meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
has_separate_license_file: This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name	Abstract	Version	View
InSilicoSpectro	Open source Perl library for proteomics	1.3.24	metacpan
InSilicoSpectro::InSilico::AASequence	Elementary protein sequence.		metacpan
InSilicoSpectro::InSilico::CleavEnzyme			metacpan
InSilicoSpectro::InSilico::ExpCalibrator	Calibrates a RetentionTimer predictor based on experimental data		metacpan
InSilicoSpectro::InSilico::InternIonSeries			metacpan
InSilicoSpectro::InSilico::IonSeries			metacpan
InSilicoSpectro::InSilico::IsoelPoint	A class for peptide isoelectric point (pI) prediction		metacpan
InSilicoSpectro::InSilico::MSMSOutput			metacpan
InSilicoSpectro::InSilico::MSMSTheoSpectrum			metacpan
InSilicoSpectro::InSilico::MassCalculator			metacpan
InSilicoSpectro::InSilico::ModRes			metacpan
InSilicoSpectro::InSilico::PMFMatch			metacpan
InSilicoSpectro::InSilico::Peptide	A class for digestion products		metacpan
InSilicoSpectro::InSilico::RetentionTimer	A base class for implementing a peptide retention time predictor		metacpan
InSilicoSpectro::InSilico::RetentionTimer::Hodges			metacpan
InSilicoSpectro::InSilico::RetentionTimer::Petritis			metacpan
InSilicoSpectro::InSilico::Sequence	Elementary sequence object		metacpan
InSilicoSpectro::InSilico::TermIonSeries			metacpan
InSilicoSpectro::Spectra::ExpSpectrum	A class for representing spectra.		metacpan
InSilicoSpectro::Spectra::Filter::MSFilter		0.9	metacpan
InSilicoSpectro::Spectra::Filter::MSFilterAlgorithm		0.9	metacpan
InSilicoSpectro::Spectra::Filter::MSFilterCollection		0.9	metacpan
InSilicoSpectro::Spectra::Filter::MSFilterDirectValue		0.9	metacpan
InSilicoSpectro::Spectra::MSMSCmpd			metacpan
InSilicoSpectro::Spectra::MSMSSpectra			metacpan
InSilicoSpectro::Spectra::MSRun			metacpan
InSilicoSpectro::Spectra::MSSpectra			metacpan
InSilicoSpectro::Spectra::PeakDescriptor	Description of peak properties		metacpan
InSilicoSpectro::Spectra::PhenyxPeakDescriptor			metacpan
InSilicoSpectro::Utils::FileCached			metacpan
InSilicoSpectro::Utils::Files			metacpan
InSilicoSpectro::Utils::XML::SaxIndexMaker			metacpan
InSilicoSpectro::Utils::io			metacpan

Other Files


Build.PL	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README	metacpan