Bio-MLST-Check 2.1.1534813
- Released by
- AJPAGE
- Version
- Release Date
- 2015-12-14
- Kwalitee
- 146.88
- Core Kwalitee
- 93.75
- LINKS
Bio-MLST-Check 2.1.1534813 Deleted
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- no_pod_errors
-
Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.
Error: Bio-MLST-Check-2.1.1534813/lib/Bio/MLST/FilterAlleles.pm -- Around line 57: Unknown directive: =head Around line 61: Unknown directive: =head
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- meta_yml_has_provides
-
Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::MLST::Blast::BlastN | Wrapper around NCBI BlastN | 2.0011534813 | metacpan |
| Bio::MLST::Blast::Database | Wrapper around NCBIs makeblastdb command | 2.0011534813 | metacpan |
| Bio::MLST::CDC::Convert | Take in a fasta file of emmST sequences and convert it into an MLST format | 2.0011534813 | metacpan |
| Bio::MLST::Check | Multilocus sequence type checking using blast | 2.0011534813 | metacpan |
| Bio::MLST::CheckMultipleSpecies | High throughput multilocus sequence typing (MLST) checking against several MLST databases. | 2.0011534813 | metacpan |
| Bio::MLST::CompareAlleles | Get a list of matching alleles between the sequence and database | 2.0011534813 | metacpan |
| Bio::MLST::DatabaseSettings | Read in an XML file of settings and return a hash with the values. | 2.0011534813 | metacpan |
| Bio::MLST::Databases | List available MLST databases | 2.0011534813 | metacpan |
| Bio::MLST::Download::Database | Represents a single genus-species database on a single species | 2.0011534813 | metacpan |
| Bio::MLST::Download::Databases | Represents multiple databases of species | 2.0011534813 | metacpan |
| Bio::MLST::Download::Downloadable | Moose Role to download everything data | 2.0011534813 | metacpan |
| Bio::MLST::FilterAlleles | 2.0011534813 | metacpan | |
| Bio::MLST::NormaliseFasta | Take in a Fasta file, check for invalid characters and build a corrected file if needed. | 2.0011534813 | metacpan |
| Bio::MLST::OutputFasta | Take in two hashes, both containing sequence names and sequences and output fasta files. | 2.0011534813 | metacpan |
| Bio::MLST::ProcessFasta | Take in a fasta file, lookup the MLST database and create relevant files. | 2.0011534813 | metacpan |
| Bio::MLST::SearchForFiles | Take in a species name and get the allele and profile files. | 2.0011534813 | metacpan |
| Bio::MLST::SequenceType | Take in a list of matched alleles and look up the sequence type from the profile. | 2.0011534813 | metacpan |
| Bio::MLST::Spreadsheet::File | Create a file representation of the ST results for multiple fasta files. | 2.0011534813 | metacpan |
| Bio::MLST::Spreadsheet::Row | Create a row representation of the ST results for a single fasta file. | 2.0011534813 | metacpan |
| Bio::MLST::Types | Moose types to use for validation. | 2.0011534813 | metacpan |
| Bio::MLST::Validate::Executable | Validates the executable is available in the path before running it. | 2.0011534813 | metacpan |
| Bio::MLST::Validate::File | Check to see if a file exists. For validation when classes have input files. | 2.0011534813 | metacpan |
| Bio::MLST::Validate::Resource | Check to see if a file exists or if a uri is valid. For validation when classes have input files which may be local or on the web. | 2.0011534813 | metacpan |