Bio-MLST-Check 2.1.1706216
- Released by
- AJPAGE
- Version
- Release Date
- 2017-03-04
- Kwalitee
- 153.12
- Core Kwalitee
- 96.88
- LINKS
Bio-MLST-Check 2.1.1706216 Latest
Kwalitee Issues
- has_changelog
-
Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.
- meta_yml_declares_perl_version
-
If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::MLST::Blast::BlastN | Wrapper around NCBI BlastN | v2.1.1706216 | metacpan |
| Bio::MLST::Blast::Database | Wrapper around NCBIs makeblastdb command | v2.1.1706216 | metacpan |
| Bio::MLST::CDC::Convert | Take in a fasta file of emmST sequences and convert it into an MLST format | v2.1.1706216 | metacpan |
| Bio::MLST::Check | Multilocus sequence type checking using blast | v2.1.1706216 | metacpan |
| Bio::MLST::CheckMultipleSpecies | High throughput multilocus sequence typing (MLST) checking against several MLST databases. | v2.1.1706216 | metacpan |
| Bio::MLST::CompareAlleles | Get a list of matching alleles between the sequence and database | v2.1.1706216 | metacpan |
| Bio::MLST::DatabaseSettings | Read in an XML file of settings and return a hash with the values. | v2.1.1706216 | metacpan |
| Bio::MLST::Databases | List available MLST databases | v2.1.1706216 | metacpan |
| Bio::MLST::Download::Database | Represents a single genus-species database on a single species | v2.1.1706216 | metacpan |
| Bio::MLST::Download::Databases | Represents multiple databases of species | v2.1.1706216 | metacpan |
| Bio::MLST::Download::Downloadable | Moose Role to download everything data | v2.1.1706216 | metacpan |
| Bio::MLST::FilterAlleles | Filter Alleles | v2.1.1706216 | metacpan |
| Bio::MLST::NormaliseFasta | Take in a Fasta file, check for invalid characters and build a corrected file if needed. | v2.1.1706216 | metacpan |
| Bio::MLST::OutputFasta | Take in two hashes, both containing sequence names and sequences and output fasta files. | v2.1.1706216 | metacpan |
| Bio::MLST::ProcessFasta | Take in a fasta file, lookup the MLST database and create relevant files. | v2.1.1706216 | metacpan |
| Bio::MLST::SearchForFiles | Take in a species name and get the allele and profile files. | v2.1.1706216 | metacpan |
| Bio::MLST::SequenceType | Take in a list of matched alleles and look up the sequence type from the profile. | v2.1.1706216 | metacpan |
| Bio::MLST::Spreadsheet::File | Create a file representation of the ST results for multiple fasta files. | v2.1.1706216 | metacpan |
| Bio::MLST::Spreadsheet::Row | Create a row representation of the ST results for a single fasta file. | v2.1.1706216 | metacpan |
| Bio::MLST::Types | Moose types to use for validation. | v2.1.1706216 | metacpan |
| Bio::MLST::Validate::Executable | Validates the executable is available in the path before running it. | v2.1.1706216 | metacpan |
| Bio::MLST::Validate::File | Check to see if a file exists. For validation when classes have input files. | v2.1.1706216 | metacpan |
| Bio::MLST::Validate::Resource | Check to see if a file exists or if a uri is valid. For validation when classes have input files which may be local or on the web. | v2.1.1706216 | metacpan |