Kwalitee Issues


Add a Changelog (best named 'Changes') to the distribution. It should list at least major changes implemented in newer versions.


If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.


Name Abstract Version View
Bio::MLST::Blast::BlastN Wrapper around NCBI BlastN v2.1.1706216 metacpan
Bio::MLST::Blast::Database Wrapper around NCBIs makeblastdb command v2.1.1706216 metacpan
Bio::MLST::CDC::Convert Take in a fasta file of emmST sequences and convert it into an MLST format v2.1.1706216 metacpan
Bio::MLST::Check Multilocus sequence type checking using blast v2.1.1706216 metacpan
Bio::MLST::CheckMultipleSpecies High throughput multilocus sequence typing (MLST) checking against several MLST databases. v2.1.1706216 metacpan
Bio::MLST::CompareAlleles Get a list of matching alleles between the sequence and database v2.1.1706216 metacpan
Bio::MLST::DatabaseSettings Read in an XML file of settings and return a hash with the values. v2.1.1706216 metacpan
Bio::MLST::Databases List available MLST databases v2.1.1706216 metacpan
Bio::MLST::Download::Database Represents a single genus-species database on a single species v2.1.1706216 metacpan
Bio::MLST::Download::Databases Represents multiple databases of species v2.1.1706216 metacpan
Bio::MLST::Download::Downloadable Moose Role to download everything data v2.1.1706216 metacpan
Bio::MLST::FilterAlleles Filter Alleles v2.1.1706216 metacpan
Bio::MLST::NormaliseFasta Take in a Fasta file, check for invalid characters and build a corrected file if needed. v2.1.1706216 metacpan
Bio::MLST::OutputFasta Take in two hashes, both containing sequence names and sequences and output fasta files. v2.1.1706216 metacpan
Bio::MLST::ProcessFasta Take in a fasta file, lookup the MLST database and create relevant files. v2.1.1706216 metacpan
Bio::MLST::SearchForFiles Take in a species name and get the allele and profile files. v2.1.1706216 metacpan
Bio::MLST::SequenceType Take in a list of matched alleles and look up the sequence type from the profile. v2.1.1706216 metacpan
Bio::MLST::Spreadsheet::File Create a file representation of the ST results for multiple fasta files. v2.1.1706216 metacpan
Bio::MLST::Spreadsheet::Row Create a row representation of the ST results for a single fasta file. v2.1.1706216 metacpan
Bio::MLST::Types Moose types to use for validation. v2.1.1706216 metacpan
Bio::MLST::Validate::Executable Validates the executable is available in the path before running it. v2.1.1706216 metacpan
Bio::MLST::Validate::File Check to see if a file exists. For validation when classes have input files. v2.1.1706216 metacpan
Bio::MLST::Validate::Resource Check to see if a file exists or if a uri is valid. For validation when classes have input files which may be local or on the web. v2.1.1706216 metacpan

Other Files

MANIFEST metacpan
META.json metacpan
META.yml metacpan
Makefile.PL metacpan
README metacpan metacpan
dist.ini metacpan