Bio-DB-HTS 2.11
- Released by
- AVULLO
- Version
- Release Date
- 2018-05-01
- Kwalitee
- 150
- Core Kwalitee
- 96.88
- LINKS
Bio-DB-HTS 2.11
Kwalitee Issues
This is not the latest release. The following issues may have already been fixed in the newer releases.
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::HTS::VCF::Header, Bio::DB::HTS::VCF::HeaderPtr, Bio::DB::HTS::VCF::Row, Bio::DB::HTS::VCF::RowPtr
- has_known_license_in_source_file
-
Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::HTS::VCF::Header, Bio::DB::HTS::VCF::HeaderPtr, Bio::DB::HTS::VCF::Row, Bio::DB::HTS::VCF::RowPtr
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::DB::HTS | Read files using HTSlib including BAM/CRAM, Tabix and BCF database files | 2.11 | metacpan |
| Bio::DB::HTS::AlignWrapper | Add high-level methods to Bio::DB::HTS::Alignment | 2.11 | metacpan |
| Bio::DB::HTS::Alignment | The HTS alignment object | 2.11 | metacpan |
| Bio::DB::HTS::Constants | Constants for use with SAM/BAM | 2.11 | metacpan |
| Bio::DB::HTS::Fai | 2.11 | metacpan | |
| Bio::DB::HTS::Faidx | 2.11 | metacpan | |
| Bio::DB::HTS::FetchIterator | 2.11 | metacpan | |
| Bio::DB::HTS::Kseq | Bindings to Kseq | 2.11 | metacpan |
| Bio::DB::HTS::Kseq::Record | Entry from a Kseq iterator | 2.11 | metacpan |
| Bio::DB::HTS::Pileup | Object passed to pileup() callback | 2.11 | metacpan |
| Bio::DB::HTS::PileupWrapper | Add high-level methods to Bio::DB::HTS::Pileup | 2.11 | metacpan |
| Bio::DB::HTS::Query | Object representing the query portion of a BAM/SAM alignment | 2.11 | metacpan |
| Bio::DB::HTS::ReadIterator | 2.11 | metacpan | |
| Bio::DB::HTS::Segment | 2.11 | metacpan | |
| Bio::DB::HTS::Segment::Iterator | 2.11 | metacpan | |
| Bio::DB::HTS::SplitAlignmentPart | 2.11 | metacpan | |
| Bio::DB::HTS::Tabix | Object oriented access to the underlying tbx C methods | 2.11 | metacpan |
| Bio::DB::HTS::Tabix::Iterator | XS module wrapping around a tabix hts_itr_t | 2.11 | metacpan |
| Bio::DB::HTS::Target | Object representing the query portion of a BAM/SAM alignment in NATIVE alignment | 2.11 | metacpan |
| Bio::DB::HTS::VCF | Read VCF/BCF data files | 2.11 | metacpan |
| Bio::DB::HTS::VCF::Header | 2.11 | metacpan | |
| Bio::DB::HTS::VCF::HeaderPtr | 2.11 | metacpan | |
| Bio::DB::HTS::VCF::Iterator | XS module wrapping around a hts_itr_t | 2.11 | metacpan |
| Bio::DB::HTS::VCF::Row | 2.11 | metacpan | |
| Bio::DB::HTS::VCF::RowPtr | 2.11 | metacpan | |
| Bio::DB::HTS::VCF::Sweep | 2.11 | metacpan | |
| Bio::DB::HTSfile | metacpan | ||
| Bio::SeqFeature::HTSCoverage | 2.11 | metacpan |