Files

• Build.PL
• Changes
• DISCLAIMER
• INSTALL.pl
• LICENSE
• MANIFEST
• META.json
• META.yml
• README
• cpanfile
• lib/Bio/DB/HTS.pm
• lib/Bio/DB/HTS.xs
• lib/Bio/DB/HTS/AlignWrapper.pm
• lib/Bio/DB/HTS/Alignment.pm
• lib/Bio/DB/HTS/Constants.pm
• lib/Bio/DB/HTS/Faidx.pm
• lib/Bio/DB/HTS/Faidx.xs
• lib/Bio/DB/HTS/FetchIterator.pm
• lib/Bio/DB/HTS/Kseq.pm
• lib/Bio/DB/HTS/Kseq/Iterator.pod
• lib/Bio/DB/HTS/Kseq/Record.pm
• lib/Bio/DB/HTS/Pileup.pm
• lib/Bio/DB/HTS/PileupWrapper.pm
• lib/Bio/DB/HTS/Query.pm
• lib/Bio/DB/HTS/ReadIterator.pm
• lib/Bio/DB/HTS/Segment.pm
• lib/Bio/DB/HTS/Tabix.pm
• lib/Bio/DB/HTS/Tabix/Iterator.pm
• lib/Bio/DB/HTS/Target.pm
• lib/Bio/DB/HTS/VCF.pm
• lib/Bio/DB/HTS/VCF/Header.pm
• lib/Bio/DB/HTS/VCF/HeaderPtr.pm
• lib/Bio/DB/HTS/VCF/Iterator.pm
• lib/Bio/DB/HTS/VCF/Row.pm
• lib/Bio/DB/HTS/VCF/RowPtr.pm
• ppport.h
• scripts/build_options.sh
• scripts/convert_gz_2_bgz.sh
• t/00load.t
• t/01bam.t
• t/02faidx.t
• t/03cram.t
• t/04tabix.t
• t/05vcf.t
• t/06kseq.t
• t/07cramwrite.t
• t/08bamwrite.t
• t/09sam.t
• t/10leak.t
• t/data/00README.txt
• t/data/Saccharomyces_cerevisiae.R64-1-1.dna.chromosome.I.fa.gz
• t/data/data.vcf.gz
• t/data/data.vcf.gz.tbi
• t/data/dm3_3R_4766911_4767130.sam
• t/data/dm3_3R_4766911_4767130.sam.bam
• t/data/dm3_3R_4766911_4767130.sam.sorted.bam
• t/data/ex1.bam
• t/data/ex1.fa
• t/data/ex1.sam.gz
• t/data/ex2.bam
• t/data/ex2.sam.gz
• t/data/ex3.bam
• t/data/ex3.bam.csi
• t/data/no_index.tsv.gz
• t/data/test.bcf
• t/data/test.bcf.csi
• t/data/test.sam
• t/data/test.tsv.gz
• t/data/test.tsv.gz.tbi
• t/data/test.vcf.gz
• t/data/test.vcf.gz.tbi
• t/data/yeast.fasta
• t/data/yeast.sorted.cram
• t/kseq_data/bug2335.fastq
• t/kseq_data/evil_wrapping.fastq
• t/kseq_data/example.fasta
• t/kseq_data/example.fastq
• t/kseq_data/illumina_faked.fastq
• t/kseq_data/sanger_93.fastq
• t/kseq_data/sanger_faked.fastq
• t/kseq_data/solexa_example.fastq
• t/kseq_data/solexa_faked.fastq
• t/kseq_data/test1_sanger.fastq
• t/kseq_data/test2_solexa.fastq
• t/kseq_data/test3_illumina.fastq
• t/kseq_data/tricky.fastq
• t/kseq_data/wrapping_issues.fastq
• t/kseq_data/zero_qual.fastq
• typemap