Kwalitee Issues

no_pod_errors

Remove the POD errors. You can check for POD errors automatically by including Test::Pod to your test suite.

Error: *** ERROR: unresolved internal link 'Examples' at line 875 in file Bio-DB-HTS-3.01/lib/Bio/DB/HTS.pm

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::DB::HTS::VCF::Header, Bio::DB::HTS::VCF::HeaderPtr, Bio::DB::HTS::VCF::Row, Bio::DB::HTS::VCF::RowPtr

has_known_license_in_source_file

Add =head1 LICENSE and/or the proper text of the well-known license to the main module in your code.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: Bio::DB::HTS::VCF::Header, Bio::DB::HTS::VCF::HeaderPtr, Bio::DB::HTS::VCF::Row, Bio::DB::HTS::VCF::RowPtr

Modules

Name Abstract Version View
Bio::DB::HTS Read files using HTSlib including BAM/CRAM, Tabix and BCF database files 3.01 metacpan
Bio::DB::HTS::AlignWrapper Add high-level methods to Bio::DB::HTS::Alignment 3.01 metacpan
Bio::DB::HTS::Alignment The HTS alignment object 3.01 metacpan
Bio::DB::HTS::Constants Constants for use with SAM/BAM 3.01 metacpan
Bio::DB::HTS::Fai 3.01 metacpan
Bio::DB::HTS::Faidx 3.01 metacpan
Bio::DB::HTS::FetchIterator 3.01 metacpan
Bio::DB::HTS::HTSfile 3.01 metacpan
Bio::DB::HTS::Kseq Bindings to Kseq 3.01 metacpan
Bio::DB::HTS::Kseq::Record Entry from a Kseq iterator 3.01 metacpan
Bio::DB::HTS::Pileup Object passed to pileup() callback 3.01 metacpan
Bio::DB::HTS::PileupWrapper Add high-level methods to Bio::DB::HTS::Pileup 3.01 metacpan
Bio::DB::HTS::Query Object representing the query portion of a BAM/SAM alignment 3.01 metacpan
Bio::DB::HTS::ReadIterator 3.01 metacpan
Bio::DB::HTS::Segment 3.01 metacpan
Bio::DB::HTS::Segment::Iterator 3.01 metacpan
Bio::DB::HTS::SplitAlignmentPart 3.01 metacpan
Bio::DB::HTS::Tabix Object oriented access to the underlying tbx C methods 3.01 metacpan
Bio::DB::HTS::Tabix::Iterator XS module wrapping around a tabix hts_itr_t 3.01 metacpan
Bio::DB::HTS::Target Object representing the query portion of a BAM/SAM alignment in NATIVE alignment 3.01 metacpan
Bio::DB::HTS::VCF Read VCF/BCF data files 3.01 metacpan
Bio::DB::HTS::VCF::Header 3.01 metacpan
Bio::DB::HTS::VCF::HeaderPtr 3.01 metacpan
Bio::DB::HTS::VCF::Iterator XS module wrapping around a hts_itr_t 3.01 metacpan
Bio::DB::HTS::VCF::Row 3.01 metacpan
Bio::DB::HTS::VCF::RowPtr 3.01 metacpan
Bio::DB::HTS::VCF::Sweep 3.01 metacpan
Bio::DB::HTSfile metacpan
Bio::SeqFeature::HTSCoverage 3.01 metacpan

Other Files

Build.PL metacpan
Changes metacpan
MANIFEST metacpan
META.json metacpan
META.yml metacpan
README metacpan
cpanfile metacpan