CPANTS

Bio-RNA-SpliceSites-Scoring-MaxEntScan 0.02 Deleted

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

has_meta_yml

Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.

no_generated_files

Remove the offending files/directories!

Error: Makefile, pm_to_blib

portable_filenames

Rename those files with alphanumerical characters, or maybe remove them because in many cases they are automatically generated for local installation.

Error:

blib/man3/Bio::RNA::SpliceSites::Scoring::MaxEntScan.3pm
blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x3acc.3pm
blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5.3pm
blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::splice5sequences.3pm

no_mymeta_files

Update MANIFEST.SKIP to exclude MYMETA files. If you are lazy, add "#!install_default" in your MANIFEST.SKIP and update your ExtUtils::Manifest if necessary, then some of the most common files will be excluded.

manifest_matches_dist

Run a proper command ("make manifest" or "./Build manifest", maybe with a force option), or use a distribution builder to generate the MANIFEST. Or update MANIFEST manually.

Error:

MANIFEST (12) does not match dist (120):
Missing in MANIFEST: .git/COMMIT_EDITMSG, .git/HEAD, .git/config, .git/description, .git/hooks/applypatch-msg.sample, .git/hooks/commit-msg.sample, .git/hooks/post-update.sample, .git/hooks/pre-applypatch.sample, .git/hooks/pre-commit.sample, .git/hooks/pre-rebase.sample, .git/hooks/prepare-commit-msg.sample, .git/hooks/update.sample, .git/index, .git/info/exclude, .git/logs/HEAD, .git/logs/refs/heads/master, .git/logs/refs/remotes/origin/master, .git/objects/03/2afd57b1abf3b8756309e9c00036c97bd81d16, .git/objects/14/924ccd1242528c2e498e22cb223ce80a37d282, .git/objects/1f/df9e6758251828f51de8c8c7446d9ea1e7d7bb, .git/objects/21/083608f05de24e97230c825a58a5afa52c6fdc, .git/objects/24/ba6e2e9d62efb74503a1c00b9a75ec4946d1b4, .git/objects/27/c36cb8fbadc1bb52a7b62783791b1f27dcfabd, .git/objects/39/3c69b4b351bc221647a49155ebcf98964896db, .git/objects/3c/d6d10dc070f4f5bd4e29f2fcec4baef1d0dcce, .git/objects/43/1f03bf089e4a3b2fd19d4590327fd7924087a0, .git/objects/45/de1ba4984a8c1a04ad8d7d337b8ce667e7ae52, .git/objects/47/967e579d52a1a6c886186014527f6da5da001e, .git/objects/4a/ac7eaabb48c08da75ed68c8b4be9fb83228103, .git/objects/4d/5ba6aa2cd26d75ac7931208f747ef77b12e166, .git/objects/57/0556e99f93a3c9d17faac13d4781b0c07361f1, .git/objects/5f/c7836e51ad6e98ad4f7a113f7d2fd3d1df78c6, .git/objects/60/e82c08e8a219d0b49f7eac6dce914e7d4f5f2e, .git/objects/61/56490d3459123395c825afac5282c2faca991a, .git/objects/62/2e9df81a5050a6db544328a4bfa60ff7b7d088, .git/objects/64/66706b34f3a21850316cce63b477555cc86035, .git/objects/66/cde63f3df8aed4a3aa80da26ae1f2dfa2ab3e2, .git/objects/67/c6832a697e25d44cd6690d8fe725d16ab79e38, .git/objects/68/11d9ba37ae53bcba2c32f69c04be14834e4459, .git/objects/68/9944fce0fc9b5b71465504b4d65dfb56cc81c9, .git/objects/6e/7b85df31c542f9d2c2fa18c8533ae2d970cac6, .git/objects/71/a9bc24d6a8f318bdf827d3c8520de497811b41, .git/objects/77/bdfbb26bb89935828850a9002b67e94fc31ece, .git/objects/7a/775320979f28a76e1142325f49dc1a2ec4fa45, .git/objects/80/b240d34df305a850f069f7ae7856e3aed9fe3a, .git/objects/81/27a320bf62c4969ef83edad90640a564cbf460, .git/objects/84/4e77ecbda68b68c5ebf8498b3c5eb1ab3a325b, .git/objects/86/6fac2b98d9a29d8f6134a83d8a9ac93fdc1985, .git/objects/87/89da531dec28ff7dbb596a2aa0c83418ad5c5b, .git/objects/87/d52acf23b45478533d568de47824864390c73b, .git/objects/8b/bfd1b03e9084c0bd712ec2122b2d5d5484079b, .git/objects/8c/3bf9c1e8515e9a91202c7b44d20c46f5332099, .git/objects/8f/a3dccc21d5a20a40980b522c34929a0ca74a3a, .git/objects/8f/bf3b45ef1336b8c5ea1be0ac8179ac97be44c6, .git/objects/93/37ed209af05a530eeab166dc2d5bc7a27e2a74, .git/objects/93/657d9db39ef8e62a1c818fc3c6a8bd6d1f8312, .git/objects/96/03bfcd4b4c88a662295b2ab6f60f8fd16a41e0, .git/objects/a0/054e97dbf13ba7b22bb116752d6f22030daaa6, .git/objects/a5/8db95d46a0332aa19e031e1d5ff3be7a4debf4, .git/objects/a7/424f146507dd1910575c11dc359db8ebb65f73, .git/objects/ab/ab82fdd7a166323103c85bbd3c0713acedb8b5, .git/objects/b0/60dd3542e37db25a1841897620deedcace2edd, .git/objects/bc/7a92d46a9bc4510c7836c684179240eca59606, .git/objects/c3/4890216fe5a8443de3f75c4a505a2e2b2d62cc, .git/objects/c9/8daf2c3185916d85262464584a996a74fd6a19, .git/objects/ca/122165932f7e410404136d54f1585392c795df, .git/objects/d7/a01bb980b3caa1d8fefcf28e5639849e307bc1, .git/objects/df/4cfd09511fef5c5183697ee09037506c1ace09, .git/objects/e3/c4ee910c9e625494693a2bd1f7b365c88a51ed, .git/objects/e4/e04edcbc6fceeab10227b9b71a44e061323233, .git/objects/e6/9de29bb2d1d6434b8b29ae775ad8c2e48c5391, .git/objects/fd/29042206dba4e582eb541669ac63a0ebb4af36, .git/objects/ff/43298186fbe721b9711f6951e16850e971e664, .git/refs/heads/master, .git/refs/remotes/origin/master, .gitignore, Changes~, MANIFEST~, MYMETA.json, MYMETA.yml, Makefile, README~, blib/arch/.exists, blib/arch/auto/Bio/RNA/SpliceSites/Scoring/MaxEntScan/.exists, blib/bin/.exists, blib/lib/Bio/RNA/SpliceSites/Scoring/.exists, blib/lib/Bio/RNA/SpliceSites/Scoring/MaxEntScan.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x3acc.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x5.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/splice5sequences.pm, blib/lib/auto/Bio/RNA/SpliceSites/Scoring/MaxEntScan/.exists, blib/man1/.exists, blib/man3/.exists, blib/man3/Bio::RNA::SpliceSites::Scoring::MaxEntScan.3pm, blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x3acc.3pm, blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5.3pm, blib/man3/Bio::RNA::SpliceSites::Scoring::SpliceModels::splice5sequences.3pm, blib/script/.exists, ignore.txt, ignore.txt~, lib/Bio/RNA/SpliceSites/Scoring/MaxEntScan.pm~, lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x3acc.pm~, lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x5.pm~, lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/splice5sequences.pm~, pm_to_blib, t/Bio-RNA-SpliceSites-Scoring-MaxEntScan.t, t/Bio-RNA-SpliceSites-Scoring-MaxEntScan.t~, t/boilerplate.t

use_strict

Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.

Error: Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x3acc, Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x3acc, Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5, Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5, Bio::RNA::SpliceSites::Scoring::SpliceModels::splice5sequences, Bio::RNA::SpliceSites::Scoring::SpliceModels::splice5sequences

5 Extra Issues

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

no_dot_dirs

Fix MANIFEST (or MANIFEST.SKIP) to exclude dot directories from a distribution. Use an appropriate tool and avoid archiving your working directory by hand. If you switch your version control system, remove old VCS directories after you migrate.

Error: .git

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: blib/lib/Bio/RNA/SpliceSites/Scoring/MaxEntScan.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x3acc.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/me2x5.pm, blib/lib/Bio/RNA/SpliceSites/Scoring/SpliceModels/splice5sequences.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

3 Experimental Issues

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
has_separate_license_file: This is not a critical issue. Currently mainly informative for the CPANTS authors. It might be removed later.

Modules

Name	Abstract	Version	View
Bio::RNA::SpliceSites::Scoring::MaxEntScan	Perl module for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.	0.02	metacpan
Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x3acc	3' splice site data submodule for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.	0.02	metacpan
Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5	5' splice site data submodule for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.	0.02	metacpan
Bio::RNA::SpliceSites::Scoring::SpliceModels::splice5sequences	5' splice site data submodule for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.	0.02	metacpan

Other Files


Changes	metacpan
Changes~	metacpan
MANIFEST	metacpan
Makefile.PL	metacpan
README	metacpan
README~	metacpan