CPANTS

onto-perl 1.03 Deleted

Kwalitee Issues

This is not the latest release. The following issues may have already been fixed in the newer releases.

Take a look at the META.yml Spec at https://metacpan.org/pod/CPAN::Meta::History::Meta_1_4 (for version 1.4) or https://metacpan.org/pod/CPAN::Meta::Spec (for version 2), and change your META.yml accordingly.

Error: Expected a map structure from string or file. (requires) [Validation: 1.0]

buildtool_not_executable

Change the permissions of Build.PL/Makefile.PL to not-executable.

main_module_version_matches_dist_version

Make sure that the main module name and version are the same of the distribution.

5 Extra Issues

meta_yml_declares_perl_version

If you are using Build.PL define the {requires}{perl} = VERSION field. If you are using MakeMaker (Makefile.PL) you should upgrade ExtUtils::MakeMaker to 6.48 and use MIN_PERL_VERSION parameter. Perl::MinimumVersion can help you determine which version of Perl your module needs.

has_meta_json

Add a META.json to the distribution. Your buildtool should be able to autogenerate it.

proper_libs

Move your *.pm files in a directory named 'lib'. The directory structure should look like 'lib/Your/Module.pm' for a module named 'Your::Module'. If you need to provide additional files, e.g. for testing, that should not be considered for Kwalitee, then you should look at the 'provides' map in META.yml to limit the files scanned; or use the 'no_index' map to exclude parts of the distribution.

Error: CCO/Core/Dbxref.pm, CCO/Core/Def.pm, CCO/Core/GoaAssociation.pm, CCO/Core/IDspace.pm, CCO/Core/Interaction.pm, CCO/Core/Interactor.pm, CCO/Core/Ontology.pm, CCO/Core/Relationship.pm, CCO/Core/RelationshipType.pm, CCO/Core/Synonym.pm, CCO/Core/SynonymTypeDef.pm, CCO/Core/Term.pm, CCO/Parser/GoaParser.pm, CCO/Parser/IntActParser.pm, CCO/Parser/InteractionManager.pm, CCO/Parser/NCBIParser.pm, CCO/Parser/NewIntActParser.pm, CCO/Parser/OBOParser.pm, CCO/Parser/OWLParser.pm, CCO/Parser/OrthoMCLParser.pm, CCO/Parser/UniProtParser.pm, CCO/Util/CCO_ID.pm, CCO/Util/CCO_ID_Set.pm, CCO/Util/CCO_ID_Term_Map.pm, CCO/Util/DbxrefSet.pm, CCO/Util/GoaAssociationSet.pm, CCO/Util/ObjectIdSet.pm, CCO/Util/ObjectSet.pm, CCO/Util/Ontolome.pm, CCO/Util/Set.pm, CCO/Util/SynonymSet.pm, CCO/Util/SynonymTypeDefSet.pm, CCO/Util/TermSet.pm, CCO/Util/XMLIntactParser.pm

meta_yml_has_license

Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.

use_warnings

Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.

Error: CCO::Util::CCO_ID, CCO::Util::CCO_ID_Term_Map

5 Experimental Issues

meta_yml_has_provides: Add all modules contained in this distribution to the META.yml field 'provides'. Module::Build or Dist::Zilla::Plugin::MetaProvides do this automatically for you.
meta_yml_has_repository_resource: Add a 'repository' resource to the META.yml via 'meta_add' accessor (for Module::Build) or META_ADD parameter (for ExtUtils::MakeMaker).
has_security_doc: Add SECURITY(.pod|md). See Software::Security::Policy.
security_doc_contains_contact: Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
has_contributing_doc: Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.

Modules

Name	Abstract	View
CCO::Core::Dbxref	Reference structure.	metacpan
CCO::Core::Def	A definition structure of the current term. A term must have zero or one instance of this type per term description.	metacpan
CCO::Core::GoaAssociation		metacpan
CCO::Core::IDspace	A mapping between a "local" ID space and a "global" ID space	metacpan
CCO::Core::Interaction	An interaction from IntAct	metacpan
CCO::Core::Interactor	An interactor from IntAct	metacpan
CCO::Core::Ontology	An ontology holding terms and their relationships	metacpan
CCO::Core::Relationship	A relationship between two terms or two relationships within an ontology.	metacpan
CCO::Core::RelationshipType	A type of relationship type in an ontology	metacpan
CCO::Core::Synonym	A term synonym	metacpan
CCO::Core::SynonymTypeDef	A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier.	metacpan
CCO::Core::Term	A universal/term/class/concept in an ontology	metacpan
CCO::Parser::GoaParser	A GOA associations to OBO translator.	metacpan
CCO::Parser::IntActParser	An IntAct to OBO parser/filter.	metacpan
CCO::Parser::InteractionManager		metacpan
CCO::Parser::NCBIParser		metacpan
CCO::Parser::NewIntActParser		metacpan
CCO::Parser::OBOParser		metacpan
CCO::Parser::OWLParser		metacpan
CCO::Parser::OrthoMCLParser		metacpan
CCO::Parser::UniProtParser	A UniProt to OBO translator.	metacpan
CCO::Util::CCO_ID	A module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.	metacpan
CCO::Util::CCO_ID_Set	An implementation of a set of CCO::Util::CCO_ID objects.	metacpan
CCO::Util::CCO_ID_Term_Map		metacpan
CCO::Util::DbxrefSet		metacpan
CCO::Util::GoaAssociationSet		metacpan
CCO::Util::ObjectIdSet	A Set implementation of object Ids	metacpan
CCO::Util::ObjectSet	An implementation of a set of ontology objects	metacpan
CCO::Util::Ontolome	a set of ontologies	metacpan
CCO::Util::Set	A Set implementation	metacpan
CCO::Util::SynonymSet	A Set implementation of Synonyms	metacpan
CCO::Util::SynonymTypeDefSet	A Set implementation of Synonym Types	metacpan
CCO::Util::TermSet	A Set implementation	metacpan
CCO::Util::XMLIntactParser		metacpan

Other Files


Changes	metacpan
MANIFEST	metacpan
META.yml	metacpan
Makefile.PL	metacpan
README	metacpan