Bio-DB-HTS 2.0
- Released by
- RISHIDEV
- Version
- Release Date
- 2016-05-26
- Kwalitee
- 150
- Core Kwalitee
- 96.88
- LINKS
Bio-DB-HTS 2.0 Deleted
Kwalitee Issues
- use_strict
-
Add 'use strict' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules are strictly written.
Error: Bio::DB::HTS::Kseq::Record
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: Bio::DB::HTS::Kseq::Record
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 1.12,2.0
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| Bio::DB::HTS | Read SAM/BAM/CRAM database files | 2.0 | metacpan |
| Bio::DB::HTS::AlignWrapper | Add high-level methods to Bio::DB::HTS::Alignment | 2.0 | metacpan |
| Bio::DB::HTS::Alignment | The HTS alignment object | 2.0 | metacpan |
| Bio::DB::HTS::Constants | Constants for use with SAM/BAM | 2.0 | metacpan |
| Bio::DB::HTS::Fai | 2.0 | metacpan | |
| Bio::DB::HTS::Faidx | 2.0 | metacpan | |
| Bio::DB::HTS::FetchIterator | 2.0 | metacpan | |
| Bio::DB::HTS::HTSfile | 2.0 | metacpan | |
| Bio::DB::HTS::Kseq | Bindings to Kseq | 2.0 | metacpan |
| Bio::DB::HTS::Kseq::Record | Entry from a Kseq iterator | 2.0 | metacpan |
| Bio::DB::HTS::Pileup | Object passed to pileup() callback | 2.0 | metacpan |
| Bio::DB::HTS::PileupWrapper | Add high-level methods to Bio::DB::HTS::Pileup | 2.0 | metacpan |
| Bio::DB::HTS::Query | Object representing the query portion of a BAM/SAM alignment | 2.0 | metacpan |
| Bio::DB::HTS::ReadIterator | 2.0 | metacpan | |
| Bio::DB::HTS::Segment | 2.0 | metacpan | |
| Bio::DB::HTS::Segment::Iterator | 2.0 | metacpan | |
| Bio::DB::HTS::SplitAlignmentPart | 2.0 | metacpan | |
| Bio::DB::HTS::Tabix | Object oriented access to the underlying tbx C methods | 2.0 | metacpan |
| Bio::DB::HTS::Tabix::Iterator | XS module wrapping around a tabix hts_itr_t | 2.0 | metacpan |
| Bio::DB::HTS::Target | Object representing the query portion of a BAM/SAM alignment in NATIVE alignment | 2.0 | metacpan |
| Bio::DB::HTS::VCF | Read VCF/BCF data files | 2.0 | metacpan |
| Bio::DB::HTS::VCF::Sweep | 1.12 | metacpan | |
| Bio::DB::HTSfile | metacpan | ||
| Bio::SeqFeature::HTSCoverage | 2.0 | metacpan |