GO-TermFinder 0.6
- Released by
- SHERLOCK
- Version
- Release Date
- 2004-05-07
- Kwalitee
- 134.38
- Core Kwalitee
- 90.62
- LINKS
GO-TermFinder 0.6
Kwalitee Issues
- has_meta_yml
-
Add a META.yml to the distribution. Your buildtool should be able to autogenerate it.
- prereq_matches_use
-
List all used modules in META.yml requires
Error:
- GD
- GraphViz
- main_module_version_matches_dist_version
-
Make sure that the main module name and version are the same of the distribution.
- has_meta_json
-
Add a META.json to the distribution. Your buildtool should be able to autogenerate it.
- has_tests_in_t_dir
-
Add tests or move tests.pl to the t/ directory!
- meta_yml_has_license
-
Define the license if you are using in Build.PL. If you are using MakeMaker (Makefile.PL) you should upgrade to ExtUtils::MakeMaker version 6.31.
- use_warnings
-
Add 'use warnings' (or its equivalents) to all modules, or convince us that your favorite module is well-known enough and people can easily see the modules warn when something bad happens.
Error: GO::View, GO::View::GD
- consistent_version
-
Split the distribution, or fix the version numbers to make them consistent (use the highest version number to avoid version downgrade).
Error: 0.1,0.11,0.12,0.14,0.16,0.40
- has_security_doc
-
Add SECURITY(.pod|md). See Software::Security::Policy.
- security_doc_contains_contact
-
Add SECURITY(.pod|md) and add a contact address. See Software::Security::Policy.
- has_contributing_doc
-
Add CONTRIBUTING(.pod|md). See https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors.
Modules
| Name | Abstract | Version | View |
|---|---|---|---|
| GO::AnnotatedGene | 0.11 | metacpan | |
| GO::Annotation | 0.1 | metacpan | |
| GO::AnnotationProvider | abstract base class defining interface for how Annotation information should be provided | 0.12 | metacpan |
| GO::AnnotationProvider::AnnotationParser | parses a gene annotation file | 0.11 | metacpan |
| GO::Node | provides information about a node in the Gene Ontology | 0.16 | metacpan |
| GO::OntologyProvider | abstract base class providing API for the provision on Gene Ontology information | 0.12 | metacpan |
| GO::OntologyProvider::OntologyParser | Provides API for retrieving data from Gene Ontology files | 0.14 | metacpan |
| GO::Reference | 0.1 | metacpan | |
| GO::TermFinder | identify GO nodes that annotate a group of genes with a significant p-value | 0.40 | metacpan |
| GO::TermFinderReport::Html | prints an html table of the results of GO::TermFinder | 0.11 | metacpan |
| GO::TermFinderReport::Text | prints results of GO::TermFinder as a text report | 0.1 | metacpan |
| GO::Utils::File | simply utility module for dealing with file parsing | 0.1 | metacpan |
| GO::Utils::General | provides some general utilities for clients of other GO classes | 0.1 | metacpan |
| GO::View | Creates a gif or png image for visualing the GO DAG | 0.11 | metacpan |
| GO::View::GD | a helper class for GO::View to deal with the image | 0.1 | metacpan |